| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1379 |
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| Symbol | |
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| ID | 7973060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1504522 |
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| End bp | 1505634 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791977 |
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| Product | pseudouridine synthase, RluA family |
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| Protein accession | YP_002943296 |
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| Protein GI | 239814386 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAACA TTATAGGTGC GAAGCAAGGC CCCGCGGCCG CTCCAAATCC CGCAGTTCCA
GGCCCCGCAG TCCAAAAGGC TGCGGCGGAG GCCGGCGCGC CGCATGCGGC CATCAAGTTC
ATCACCGTCG ATGCGGAATC CGCGGGCCAG CGGCTGGACA ACTTCCTGTT TCGCCATCTG
AAGGGCGTGC CCAAGACGCA TGTCTACCGG ATCATCCGCT CGGGCGAGGT GCGCATCAAC
AAGGGGCGGG CGCAGGCCGA GACCCGCATC GAGGCCGGCG ACGTGCTGCG GCTGCCTCCC
ATCCGGATAT CGCCGCGCGC CGAAGAGGGC GCCACGCCGC CCGCGCCGGC GCGCGAATTC
CCGGTGCTGC TGGAGGACGA CGCGGTGCTG GCCATCGACA AGCCCGCCGG CGTGGCCGTG
CATGGCGGCA GCGGCGTGAG CTTTGGCGTG ATCGAGCAAT TGCGCACGGC GCGCCCGGGC
GCCAAGTTCC TGGAACTGGT GCACCGGCTC GACCGCGAGA CCTCGGGCAT CCTGCTGGTG
GCCAAGAAGC GCAGCGCGCT GGTGGCGCTG CAGGACCAGT TCCGCGAACG CGAGACCGGC
AAGACCTACC TTGCGCTGGT CGAGGGCGCC TGGCCCGCCA ACAAGAAGGT GCTCGATGCG
CCGCTCGCCA AGTACCTGCT GCCGGGCGAC GGCGCGGGCG CCGGCGAGCG CCGCGTGCGC
GTGGTCGCCA AGGACCATCC CGACGCCATG CGGGCCGTGA CGCTGGTGCG CGTGCTGGCG
CGGCTCACGC TGCCGGGTGA CGCCGCGCCG CTGTCGCTGC TGGCGGTCAC CATCAAGACC
GGCCGCACCC ACCAGATCCG CGTGCACCTT GCATCGGCCG GCCATGCGAT TGCGGGCGAC
GACAAGTACG GCGACTTCGA GCGCCAGCGC GTGTTGCAAA AGCTCGGCCT CAAGCGCATG
TTCCTGCATG CTTGGCGGCT GCAGTTCAAC CATCCCGCCA CCGGCGAGCG CGTGGCGCTG
CAGGCCGGCC TGCCTCCTGA ACTGCATGCG TTGATGCCGC CCCAGGCGAT CGAAGCGCTC
GCCCAACATC CCACTCCCAC GGCCAATGAC TGA
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| Protein sequence | MKNIIGAKQG PAAAPNPAVP GPAVQKAAAE AGAPHAAIKF ITVDAESAGQ RLDNFLFRHL
KGVPKTHVYR IIRSGEVRIN KGRAQAETRI EAGDVLRLPP IRISPRAEEG ATPPAPAREF
PVLLEDDAVL AIDKPAGVAV HGGSGVSFGV IEQLRTARPG AKFLELVHRL DRETSGILLV
AKKRSALVAL QDQFRERETG KTYLALVEGA WPANKKVLDA PLAKYLLPGD GAGAGERRVR
VVAKDHPDAM RAVTLVRVLA RLTLPGDAAP LSLLAVTIKT GRTHQIRVHL ASAGHAIAGD
DKYGDFERQR VLQKLGLKRM FLHAWRLQFN HPATGERVAL QAGLPPELHA LMPPQAIEAL
AQHPTPTAND
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