| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1367 |
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| Symbol | |
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| ID | 7973048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1487469 |
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| End bp | 1488875 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791965 |
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| Product | outer membrane porin |
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| Protein accession | YP_002943284 |
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| Protein GI | 239814374 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.321453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCGCA CGCAATCGGC ATTCCCTGCC GCCCGTCCGG CCCCGTGCCG GCGTTTCCCG
AGGGCCGGGC GACGCTGCTG GGGCGTCGCA CTGATGATGC TCGGCGGTGC CGCGGCCGGT
GCCGAAGCCC CGGTTGCCGA AGCCACCGGA GGCTTCGTCG AAGACACGCG ATGGAGCCTG
CTGAACCGCA CCGTCCTTGA ACGCCGCGAC TACCTGGACG GCGGCAGGAG CAACGGCGGG
CGCAATGCCG TGCTGCCCAA GGCCAGGCGC AGCGACTACG CGCAGGAATG GGGCTACGGC
CTCATGGGCG CGGTGGAGTC GGGCTTCACG CGCGGCGTGG TCGGCTTCGG CGCCGATGCG
CACGCCTACT TTGCGCACAA GCTCTCGGGC GACGACCTGC GCGTCGGCAA GATCCGCATG
CTGCCGGTGG ACCGCCAGGG CTACGCACAG GACGGCATTG CGCGCGGCGG CGCGGCGCTG
AAGGTGCGCA TCTCCTCCAC GGTCCTGAAG GTGGGCGAGC AGCGCGTCAA GGCGCCGATC
TTCAGTTCCT CCGACACGCG CCTCTTGCCC GAGACCATGC GCGGCTGGCT GCTCACGAGC
CACGAGATCG ACAAGCTCAC GCTGCAGGCC GGCCATTTCA CCGGCTCGGC CGACCGCAAC
GCGCGCGGCA CCGCCAATCC GCTGGTCGTC AACTACCTCG ACCCGAAGTC GCCGCGCGGC
GATGCCTTCG ACTTTGCCGG CGCGACGTGG AAGGCGGCGC CCGCGCTTTC GCTCTCGGCC
TACCTCGGGC GGCTGAAGGA CACCTGGCGC ACCGGCTACC TCGGTGCCTC CTATGCGATG
CCGCTCGACC CGAAGCGCGC GCTGGCCTTC GACCTGCAGC TCTATCACAG CAAGGACACC
GGTCGCGCGC TGGCCGGCCC GATCGACAAC ACCACCGCGA GCCTCATGGC CACCTACACG
CACGGCCCCC ACCGCCTGGG CGTGGGCTGG CAGAAGGTGG ACGGCGACAC GCCCTTCGAC
TACCTGACGC GCGGTGCCAT CTGGCTCGGC GATGCCGCGC AGCTGTCCGA CTTCAATGCG
CCGCACGAGC AATCGTGGCA GCTGCGCTAC GAAGTCGATG CCGCAAGCTG GGGCGCGCCG
GGACTCGCGA TGGGCGCCGC CTACATCCGC GGCAGCGGCA TCGACGGCAG CCGCGTGCCC
GCCCGCGGCG GCTATGCCTG GCTGGGCTAC GGCAAGGACG GCCGGCACTG GGAGCGCGAC
CTCTGGCTGC GCTACACGGT GCAGGCCGGA TCGGCCAAGG GATTGGCCTT GCTGCTGCGC
TATGGCGAGC ACCGCAGCAA CAAGGCGCAG GCCGAACTCG ACGCCCGCCA GATCCGCGTG
GCCGTCGAAT ATCCGATCGG GAGCTGA
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| Protein sequence | MIRTQSAFPA ARPAPCRRFP RAGRRCWGVA LMMLGGAAAG AEAPVAEATG GFVEDTRWSL
LNRTVLERRD YLDGGRSNGG RNAVLPKARR SDYAQEWGYG LMGAVESGFT RGVVGFGADA
HAYFAHKLSG DDLRVGKIRM LPVDRQGYAQ DGIARGGAAL KVRISSTVLK VGEQRVKAPI
FSSSDTRLLP ETMRGWLLTS HEIDKLTLQA GHFTGSADRN ARGTANPLVV NYLDPKSPRG
DAFDFAGATW KAAPALSLSA YLGRLKDTWR TGYLGASYAM PLDPKRALAF DLQLYHSKDT
GRALAGPIDN TTASLMATYT HGPHRLGVGW QKVDGDTPFD YLTRGAIWLG DAAQLSDFNA
PHEQSWQLRY EVDAASWGAP GLAMGAAYIR GSGIDGSRVP ARGGYAWLGY GKDGRHWERD
LWLRYTVQAG SAKGLALLLR YGEHRSNKAQ AELDARQIRV AVEYPIGS
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