| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1314 |
|---|
| Symbol | |
|---|
| ID | 7972995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1430582 |
|---|
| End bp | 1432909 |
|---|
| Gene Length | 2328 bp |
|---|
| Protein Length | 775 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791912 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_002943231 |
|---|
| Protein GI | 239814321 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.788879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACAG AATCACTTTC CGCCGTGCGC GATGCTGCGC TCGACTACTT CGTTCGCAGC
CGTTCCATCC AGCGGCGGCG CGAGCGCATG GAGCGGCCCG ATGCCGACGA GGCGCAGGGC
TGGAGCGCCA TGGCCGAGCT GGGCTGGACC GGCATGCTGG CACCCGAGTC CGCGGGCGGG
CTGGGGCTGA ATCTTGCGGG CGCCGCGCAG ATCCTGCGGG CCGCGGGCGA GCATGTGGCG
CCCGAGCCGT TGCTGGCGGT GGCGGGCCTG AGCGCGATGC TGCTCGCGCG GCTCAAGGCT
CCGGCCGCGC AGTCGCTGCT GGCCGAACTG GTCGCGGGCC GCAGCCTGCC GGCGCTGGCC
TGGCAGGAGA GCGCAGGCGA CCTGAGCGCC GTGCCGCTCG CCTGCGGTTG CGAGCCGCGC
GCGGGGCATG CGGGCGGCGT GCTGCTGCAG GGCGAGAAGC TCATGGTGCT GCCCGGCGCG
GCCGCCAGCG GCTGGCTGGT GTCGGCGCGC GGCAGCGACG ACGCGGTGCT GCTGTGGGTG
CCGCGCGGCA CGGCCGGCGT GAGCGAAACC CTGGTGCCGC TGGTTGACGG CAGCCAGGCT
GCGAGCCTGC GCTTCGAGCA GGTGGCGCTG CCCGCGGACG CGGTGCTGGC CGAAGGCCCC
GCCGCGCAGG ACGCGCTGCG CCACGCGCTC GCGGCCGGCC AGGTCCTGCA GGCGGCCGAA
CTGCTGGGCG TGGGCCAGGC GATGCTCGCG CAGACGCTGG CCTACCTGCG CACCCGTTCG
CAGTTCGGCA AGCCCATCGG CAGCTTCCAG GCGCTGCAGC ACCGCTGCGT GGACATGTTC
ATCCACCTCG AAGTGGCGCA GGCCGCGCTC GCCGAGGTGC TGGCACTGGC GGACCAGGGG
CTCCCGGCCG AACGGCTCGA AGCCGAAGCC AGCCGCGTCA ACGCCCGCTG CACCGCCGCG
GCGCTGCAGG CCTCGCGCAC GGCAGTGCAG CTGCATGGCG CCATCGGCTA CACGCAGGAG
TGCGAGCTGA GCCTCTACTA CAAGCGCACG CTGTGCCTTT CGGCGTGGCT CGGCAACGTG
GCCGCGCACC AGCGCCGGCA TGCCGCGCTG GCCGACGGCG GCGAAGCGCG GGCGGGCACC
GCCGCATGGG AGGGCGAGTT TCCGCGCAGC GCCGACTGGC ATGCGATGCC CGAGGCCGAG
TTCCGGCGCA TGGTGCGCGC CTTCCTGCAG CAGCGCTATC CGCAGCAGCT GCGCTACCTG
TCGCACCGCG CGCGCTGGAG CGAGATCCGC GAGTGGTATC TCACGCTGTC GGCGCAGGGC
TGGATCGCGC CGGCGTGGCC CCAGGTGCAT GGCGGCATGG GACTGCCGGC CGACAAGCTC
ATTGCATGGA TCGAGGAGCT CGAGCAGCAC GGCGTGGCGC GCGCGCCGGA CCAGGGCATC
GTGATGATCG GCCCGCTGCT GATCCAGCAT GGCACGCCGG AGCAGCAGCA GCGCTTCCTG
CCGCGCATCC TGAGTGGCGA GCATGTGTGG TGCCAGGGCT ATTCGGAGCC CAATGCCGGC
TCCGACCTGG CGGGCCTTCG CACCGAGGCG GTGGCGGGAC GCGATGCCGA GGGCGATCAC
TTCATCGTCA ACGGCCAGAA GATCTGGACC ACGCTCGCGC AGGATGCCAA CCACATCTTC
ATGCTCGTGC GCACCGACAA GGCCGCGCGC AAGCAGGAGG GCATCAGCTT CCTGCTGTGC
GACCTGCGCA CGCCGGGCAT CACGGTGCGG CCCATCCACA CGCTCTCGGG CGAGCCCGAG
TTCTGCGAAG TGTTCTTCGA CAACGTGCGC GTGCCGGCCG AAAACCTCGT GGGCCGGCTG
CATGGCGGCT GGACGATTGC CAAGGCGCTG CTGGGCTTCG AGCGCATCTT CCTCGGCAGC
CCCAAGCAGT CGCAGTACGC GCTGGGCCAG CTCGCGCGGT TGGCGCAGGC GCGGCGCCTG
TTTGCAGACC CGGTGTTCGC GCAGCGCTTT GCCGCACTGC GGCTCGACGT GCTCGATCTG
TCGGCCGCGT ACACGGGCTT TGCCGACATC GTGCGCGCGG GCCAGCCGCT GCCGGCATCG
GTGTCGTTGC TCAAGATATG GGCCAGCGAA ACCTACCACC GCATCGGCGC GCTGCTGGTC
GAGGCCGGCG AAGAGCAGGG CGCCGTCGCG GGCGACCAGC TGCTCGACGG GCAGAGCTTC
AACGTGCTGT CGCCGCTCAT CGGCTCCACC GCCGCAATGA TCTATGGCGG CACCAACGAG
ATCCAGCGCA ACATCCTCGC GCGGCAGGTG CTCGACCTGC CGGCCTGA
|
|---|
| Protein sequence | MDTESLSAVR DAALDYFVRS RSIQRRRERM ERPDADEAQG WSAMAELGWT GMLAPESAGG
LGLNLAGAAQ ILRAAGEHVA PEPLLAVAGL SAMLLARLKA PAAQSLLAEL VAGRSLPALA
WQESAGDLSA VPLACGCEPR AGHAGGVLLQ GEKLMVLPGA AASGWLVSAR GSDDAVLLWV
PRGTAGVSET LVPLVDGSQA ASLRFEQVAL PADAVLAEGP AAQDALRHAL AAGQVLQAAE
LLGVGQAMLA QTLAYLRTRS QFGKPIGSFQ ALQHRCVDMF IHLEVAQAAL AEVLALADQG
LPAERLEAEA SRVNARCTAA ALQASRTAVQ LHGAIGYTQE CELSLYYKRT LCLSAWLGNV
AAHQRRHAAL ADGGEARAGT AAWEGEFPRS ADWHAMPEAE FRRMVRAFLQ QRYPQQLRYL
SHRARWSEIR EWYLTLSAQG WIAPAWPQVH GGMGLPADKL IAWIEELEQH GVARAPDQGI
VMIGPLLIQH GTPEQQQRFL PRILSGEHVW CQGYSEPNAG SDLAGLRTEA VAGRDAEGDH
FIVNGQKIWT TLAQDANHIF MLVRTDKAAR KQEGISFLLC DLRTPGITVR PIHTLSGEPE
FCEVFFDNVR VPAENLVGRL HGGWTIAKAL LGFERIFLGS PKQSQYALGQ LARLAQARRL
FADPVFAQRF AALRLDVLDL SAAYTGFADI VRAGQPLPAS VSLLKIWASE TYHRIGALLV
EAGEEQGAVA GDQLLDGQSF NVLSPLIGST AAMIYGGTNE IQRNILARQV LDLPA
|
|---|
| |