| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1288 |
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| Symbol | |
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| ID | 7973212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1404289 |
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| End bp | 1405218 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644791885 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002943205 |
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| Protein GI | 239814295 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAATAT TGCTGCAGCA GATCATCAAC GGTCTGGTCC TGGGCAGCAT GTATGCCTTG
ATAGCCTTGG GCTACACCAT GGTGTACGGC ATCATCAATC TGATCAATTT TGCGCACGGC
GAAGTGCTGA TGGTGGGGGC GCTCACGAGC TGGACCATCA TCGGGCTCAT GAAGGAATCC
ATGCCCGGCA CGCCCGGCTG GCTGATCCTC ATCATCGCGC TGATCATCGC CTGCATCGTT
GCAGCCACGC TCAACTTCGT GATCGAGAAG GTCGCCTACC GGCCGCTTCG CAACAGTCCC
AAGCTCGCAC CGCTCATCAC GGCCATCGGC ATGTCGATCC TGCTGCAGAC GCTGGCCATG
ATCATCTGGA AGCCCACCAA CAAGGCCTAT CCCAACCTGC TGTCGACCAC GCCCATCGAG
GTGGGCGGCG CGGTGATCTC GCCCACGCAG GTCATGATCC TGAGCGTCAC GGCGTTCTCG
CTCGTGGTGC TGATGTGGCT GGTCAACTAC ACCAAGCTCG GCCGCGCGAT GCGCGCCACC
GCCGAGAACC CGCGCGTCGC GGCGCTGATG GGCATCCGGC CCGACATGGT CATTTCGGCC
ACCTTCATCA TCGGTGCCGT GCTCGCGGCC ATCGCGGGCG TCATGTACGC CTCCAACTAC
GGCATCGCGC AGCACGCGAT GGGCTTCCTG CCCGGCCTCA AGGCCTTCAC CGCGGCGGTG
TTCGGCGGCA TCGGCAACCT GGCCGGCGCG GTGGTCGGCG GCATCCTGCT CGGGCTGATC
GAAGCCATCG GCTCCGGCTA CATCGGCACC CTCACGGGTG GCGTGCTGGG CAGCAACTAC
AGCGACATCT TCGCTTTCAT CGTGTTGATC GTCATGCTCA CGCTGCGGCC CTCGGGCCTG
CTCGGCGAGC GCGTGGCGGA TCGGGCCTGA
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| Protein sequence | MEILLQQIIN GLVLGSMYAL IALGYTMVYG IINLINFAHG EVLMVGALTS WTIIGLMKES
MPGTPGWLIL IIALIIACIV AATLNFVIEK VAYRPLRNSP KLAPLITAIG MSILLQTLAM
IIWKPTNKAY PNLLSTTPIE VGGAVISPTQ VMILSVTAFS LVVLMWLVNY TKLGRAMRAT
AENPRVAALM GIRPDMVISA TFIIGAVLAA IAGVMYASNY GIAQHAMGFL PGLKAFTAAV
FGGIGNLAGA VVGGILLGLI EAIGSGYIGT LTGGVLGSNY SDIFAFIVLI VMLTLRPSGL
LGERVADRA
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