Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1286 |
Symbol | |
ID | 7973210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1402104 |
End bp | 1402736 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644791883 |
Product | outer membrane lipoprotein carrier protein LolA |
Protein accession | YP_002943203 |
Protein GI | 239814293 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.699876 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAATTC GCCATTGGCT GTTGATCGGC CTCCTGTGTT CCGCCAACGC CTGGGCCGGC GGCCTTGAAA GCCTCGAGGC CTTCGTGAAG ACGGTCAAGT CGGGCCGCGC CGAGTTCACC CAGACCGTGA CGGCGCCGCC GCGCGAAGGG CAGCCCGGCC GCACCAAGAC CTCCACCGGC ACCTTCGAAT TCCAGCGGCC CGGCAAGTTC AAGTTCGACT ATCAGAAGCC CTTTGCCCAG AGCATCGTGG CCGACGGCAA GACGCTGTGG CTCTACGACG CCGACCTGAA CCAGGTCACG CAGCGCGCCC AGTCGCAGGC GCTCGGCTCC ACGCCCGCCG CGCTGATTGC CGCGGCACCC GATCTGCGGG CGCTGCAGGC CGACTTCACG CTCGAGGCCG CGCCCGAGCG CGACGGCCTG CAGTGGGTCA AGGCCACGCC CAAGAACAAG GACGGCCAGC TGCAGAACGT GCAGGTCGGC TTCCAGGGCG ACGCGCTGGC GGCGCTCGAG ATCCTTGACA GCTTCGGGCA GCGCTCGGTG CTCAAGTTCA GCAAGGTCGA AGTGAATCCG GCGCTGCCCG CCAGCGCGTT CGAATTCAAG GCGCCCGCCG GCGCCGACGT CATCAAGCAA TAG
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Protein sequence | MKIRHWLLIG LLCSANAWAG GLESLEAFVK TVKSGRAEFT QTVTAPPREG QPGRTKTSTG TFEFQRPGKF KFDYQKPFAQ SIVADGKTLW LYDADLNQVT QRAQSQALGS TPAALIAAAP DLRALQADFT LEAAPERDGL QWVKATPKNK DGQLQNVQVG FQGDALAALE ILDSFGQRSV LKFSKVEVNP ALPASAFEFK APAGADVIKQ
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