| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1286 |
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| Symbol | |
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| ID | 7973210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1402104 |
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| End bp | 1402736 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791883 |
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| Product | outer membrane lipoprotein carrier protein LolA |
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| Protein accession | YP_002943203 |
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| Protein GI | 239814293 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
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| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.699876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAATTC GCCATTGGCT GTTGATCGGC CTCCTGTGTT CCGCCAACGC CTGGGCCGGC
GGCCTTGAAA GCCTCGAGGC CTTCGTGAAG ACGGTCAAGT CGGGCCGCGC CGAGTTCACC
CAGACCGTGA CGGCGCCGCC GCGCGAAGGG CAGCCCGGCC GCACCAAGAC CTCCACCGGC
ACCTTCGAAT TCCAGCGGCC CGGCAAGTTC AAGTTCGACT ATCAGAAGCC CTTTGCCCAG
AGCATCGTGG CCGACGGCAA GACGCTGTGG CTCTACGACG CCGACCTGAA CCAGGTCACG
CAGCGCGCCC AGTCGCAGGC GCTCGGCTCC ACGCCCGCCG CGCTGATTGC CGCGGCACCC
GATCTGCGGG CGCTGCAGGC CGACTTCACG CTCGAGGCCG CGCCCGAGCG CGACGGCCTG
CAGTGGGTCA AGGCCACGCC CAAGAACAAG GACGGCCAGC TGCAGAACGT GCAGGTCGGC
TTCCAGGGCG ACGCGCTGGC GGCGCTCGAG ATCCTTGACA GCTTCGGGCA GCGCTCGGTG
CTCAAGTTCA GCAAGGTCGA AGTGAATCCG GCGCTGCCCG CCAGCGCGTT CGAATTCAAG
GCGCCCGCCG GCGCCGACGT CATCAAGCAA TAG
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| Protein sequence | MKIRHWLLIG LLCSANAWAG GLESLEAFVK TVKSGRAEFT QTVTAPPREG QPGRTKTSTG
TFEFQRPGKF KFDYQKPFAQ SIVADGKTLW LYDADLNQVT QRAQSQALGS TPAALIAAAP
DLRALQADFT LEAAPERDGL QWVKATPKNK DGQLQNVQVG FQGDALAALE ILDSFGQRSV
LKFSKVEVNP ALPASAFEFK APAGADVIKQ
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