| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1279 |
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| Symbol | |
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| ID | 7973203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1394269 |
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| End bp | 1395540 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791876 |
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| Product | Fmu (Sun) domain protein |
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| Protein accession | YP_002943196 |
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| Protein GI | 239814286 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACCCCA AAGCCCTGTT GGAGGCCACC GCCGATCTGG TCGGCCTTGT CCTGAAATTC
GATCACCCGG CCGACCAGGT CGTTTCGCGC TTTTTCCGCG ACCACCGCGA GTTCGGCCCG
CGCGAGCGCG CCACGCTTGC CGAAACCGTC TACACCGTGC TGCGCAAGAA GCTGCTGTTC
GACCACCTTT CGCCCTCGGG CAGCGGCTCG AAGGAGCGCC GCATGGCGAT CCTGGGCTTT
CACGGCCCGC GCGACTTCCT CAAGAGCGCC CTCAACGACA CCGAAAAGCG CTGGCTCGAC
AACTGCGATG CCGTCAAGCC GGACGATCTG CTCGAACGCC ATCGCCACAA CCTGCCCGAA
TGGCTGGTGG GGCCGCTCAA GGCTCAGCTG GGCGACGGTT TCTGGGCGCT GGTCGAAAGC
CTGCAGCAGC CCGCGCCGCT CGATCTCCGC GTCAATGCGC TGACCGACAA GCGCGCCGAA
GTCAAGGCGG AGCTTGCGAA GGCTGCTATC AAATCGGAAG CAACGCCGTT CTCGCCCTGG
GGCCTGCGCA TCGACGGCAA GCCCGCGCTG ACCAAGCTGG ACGCCTTCGC CCGCGGCGCC
GTCGAGGTGC AGGACGAGGG TTCCCAACTG CTCGCGCTGC TGCTGGATGC CAAGCGGGGC
GAGATGGTGG TCGATTTTTG CGCCGGTGCC GGCGGCAAGA CGCTGGCCAT CGGCGCGACC
ATGCGCAACA CCGGCCGGCT CTACGCCTTC GACACCTCGG CCCACCGGCT CGACGCGCTC
AAGCCGCGGC TCGCGCGCAG CAAGCTGTCG AACGTGCATC CGGCCGCCAT TGCGCACGAG
CGGGACGACC GCATCAAGCG CCTGGCCGGC AAGATCGACC GCGTGCTGGT GGACGCGCCC
TGCTCGGGCC TGGGCACGCT GCGCCGCAAT CCGGACCTGA AATGGCGCCA GTCGCCCCAA
TCGGTCGAGG AATTGACGGT CAAGCAGGCC GCCATCCTGC AAAGCGCGGC ACGCCTGCTG
AAATCGGGCG GACGGCTGGT CTATGCCACC TGCAGCGTGC TGCCCGAGGA AAACGAGGCC
ATTGCCGAGG CTTTCAGCGC CGCCAACCCC GATTTCGTGC CCCAGGACGC CGCGGAACTG
CTGCAGGGGC TCAAAGTGGA GGGTTTCGAG GCGCTCTGCG CAGGCGGAGC GGACGGGCGG
CGCTATCTGC GGCTGTGGCC GCACCGCCAC GCCACGGACG GTTTCTTTGC CGCGGTGTGG
AACCGCAAAT AG
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| Protein sequence | MHPKALLEAT ADLVGLVLKF DHPADQVVSR FFRDHREFGP RERATLAETV YTVLRKKLLF
DHLSPSGSGS KERRMAILGF HGPRDFLKSA LNDTEKRWLD NCDAVKPDDL LERHRHNLPE
WLVGPLKAQL GDGFWALVES LQQPAPLDLR VNALTDKRAE VKAELAKAAI KSEATPFSPW
GLRIDGKPAL TKLDAFARGA VEVQDEGSQL LALLLDAKRG EMVVDFCAGA GGKTLAIGAT
MRNTGRLYAF DTSAHRLDAL KPRLARSKLS NVHPAAIAHE RDDRIKRLAG KIDRVLVDAP
CSGLGTLRRN PDLKWRQSPQ SVEELTVKQA AILQSAARLL KSGGRLVYAT CSVLPEENEA
IAEAFSAANP DFVPQDAAEL LQGLKVEGFE ALCAGGADGR RYLRLWPHRH ATDGFFAAVW
NRK
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