| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1253 |
|---|
| Symbol | |
|---|
| ID | 7973177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1366336 |
|---|
| End bp | 1367310 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644791850 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943170 |
|---|
| Protein GI | 239814260 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA TCCAGTTCCT CCAAGCGGCC GCGGCGGCGC TTTGCGTGGC TGCATCGACG
GCCAGCCTGG CCCAGGGCTA TCCGAACAAG CCGGTGCGGC TGATCGTGCC GTTCCCGGCG
GCCGGCGCAA CCGACCTCTT CGCCCGCACG CTCGGACAGA AGATGAGCGA AAAGCTCGGC
ACCTCGCTGA TCATCGACAA CAAGCCGGGC GCGGGCGGCG CCATCGGCTC CGACATGGCC
GCGAAGGCGC CGGCCGACGG CTATACGCTG CTGCTGGCCA CCACCAGCAC CCACTCCATC
GGGCCGGCCA TCACCAGCAA GCTGCCCTAT GACACGGTGC GCGACTTCAC GCCCATCGCG
CATGTGGGCG ATGCGCCGAG CATCATGCTG GTGCCGGTCA ACTCGCCCGC AAAGACCGTG
CGCGAATGGA TTGACCACGC AAAGAAGAAC CCCGGCAAGC TCAACTACGC GTCCAGCGGC
AACGGCACCA TCGTGCAGCT CACTGCGGAG CTCTTCAAGG CGCAGGCCGG CGTGTTCGTG
ACCCACATTC CCTACAAGGG CACCGCGCTG GCCATTCCCG ACCTGATCAG CGGCAAGGTC
GACGTGCTGT TCGACTCGCT GCCCACCGGC ATGCCGCACG TGCGCGACGG CCGGCTGCGC
GCGCTGGGCG TCACCACGCT CAAGCGCAGC CCGCTCGCGC CCGAACTGCC GCCGATCGCC
GACACGCTGC CGGGCTTCGA GTCGAACACC TGGTTCGGCT TCTACGGTCC CAAGGGCCTG
CCGGCGGACA TCGTGGCGCG CGTCAACAAA GCCGCGAACG AGGCGCTGGC CGATCCCGAG
GTGAAGGAAA AGCTGTCGCG CCTGGGCATC GAGCCTGCCG CCGCCGGAAC GCCCGAGCAG
TTCGCCAAAA TGGTGGCGGC CGATGCCGCC AAGTGGAAAA AGATCGTGGT CGAGCGCAAG
ATCACCAACG AATAA
|
|---|
| Protein sequence | MKRIQFLQAA AAALCVAAST ASLAQGYPNK PVRLIVPFPA AGATDLFART LGQKMSEKLG
TSLIIDNKPG AGGAIGSDMA AKAPADGYTL LLATTSTHSI GPAITSKLPY DTVRDFTPIA
HVGDAPSIML VPVNSPAKTV REWIDHAKKN PGKLNYASSG NGTIVQLTAE LFKAQAGVFV
THIPYKGTAL AIPDLISGKV DVLFDSLPTG MPHVRDGRLR ALGVTTLKRS PLAPELPPIA
DTLPGFESNT WFGFYGPKGL PADIVARVNK AANEALADPE VKEKLSRLGI EPAAAGTPEQ
FAKMVAADAA KWKKIVVERK ITNE
|
|---|
| |