| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1225 |
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| Symbol | |
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| ID | 7973149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1338172 |
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| End bp | 1338927 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791822 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002943142 |
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| Protein GI | 239814232 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGATC TCACAGGAAA AGCAGCGCTC GTCACCGGCG GCAACGGCGG CATCGGCCTG
GGCATGGCCC AGGGGCTGGC CAAGGCCGGC GCCCGCGTCG TCATTGCCGC GCGCAACATG
CAGAAGTCGG CTGCCGCGGT CGAGGCGCTC CGGGCCCTGG GCAGCGACAG CTTCGCGCTC
GAAGTCGACG TGGCCGACGA AGCCTCGGTG CAGAAGGCGG TCGACGAAGC AGCCGCGCGC
TGCGGCCGCC TCGACATCCT CGTCAACAAC GCCGGCACCA CCGTGCGCAA GCCCGTCGAC
CAGCTCGCGC TGGACGAATG GCGCCTGGTG CTGGACACCA ACCTGACCAG CGCCTTTCTC
TGCAGCCGCG CTGCGCATCC GCACCTGAAG GCGGCCGGCG GCAAGATCAT CAACATCGGC
TCGATGATGT CGATCTTCGG CGCACCCTAC GCACCGGCCT ATGCCGCGAG CAAGGCGGGC
ATCGTGCAGC TCACCAAGTC GACCGCGCTT TCATGGGCGG CCGACAACAT CCAGGTCAAT
GCCATCTTGC CGGGCTGGTT CGAGACCGAG CTGACCGACG GCGCCCGCAG CCAGATCCCG
GGCCTCTACG ACCGCGTGGT GGCCCGCGCC GCTGCCGGAC GCTGGGGCCA GCCGGCCGAC
ATCGCCGGCA CTGCGGTGTT CCTTGCGAGC GCCGCCTCCG ACTACGTGAC CGGCACCGCG
ATCCCGGTCG ACGGCGGATT CTCCATTTCT GGCTGA
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| Protein sequence | MFDLTGKAAL VTGGNGGIGL GMAQGLAKAG ARVVIAARNM QKSAAAVEAL RALGSDSFAL
EVDVADEASV QKAVDEAAAR CGRLDILVNN AGTTVRKPVD QLALDEWRLV LDTNLTSAFL
CSRAAHPHLK AAGGKIINIG SMMSIFGAPY APAYAASKAG IVQLTKSTAL SWAADNIQVN
AILPGWFETE LTDGARSQIP GLYDRVVARA AAGRWGQPAD IAGTAVFLAS AASDYVTGTA
IPVDGGFSIS G
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