Gene Vapar_1225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1225 
Symbol 
ID7973149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1338172 
End bp1338927 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content69% 
IMG OID644791822 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_002943142 
Protein GI239814232 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[I] Lipid transport and metabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGATC TCACAGGAAA AGCAGCGCTC GTCACCGGCG GCAACGGCGG CATCGGCCTG 
GGCATGGCCC AGGGGCTGGC CAAGGCCGGC GCCCGCGTCG TCATTGCCGC GCGCAACATG
CAGAAGTCGG CTGCCGCGGT CGAGGCGCTC CGGGCCCTGG GCAGCGACAG CTTCGCGCTC
GAAGTCGACG TGGCCGACGA AGCCTCGGTG CAGAAGGCGG TCGACGAAGC AGCCGCGCGC
TGCGGCCGCC TCGACATCCT CGTCAACAAC GCCGGCACCA CCGTGCGCAA GCCCGTCGAC
CAGCTCGCGC TGGACGAATG GCGCCTGGTG CTGGACACCA ACCTGACCAG CGCCTTTCTC
TGCAGCCGCG CTGCGCATCC GCACCTGAAG GCGGCCGGCG GCAAGATCAT CAACATCGGC
TCGATGATGT CGATCTTCGG CGCACCCTAC GCACCGGCCT ATGCCGCGAG CAAGGCGGGC
ATCGTGCAGC TCACCAAGTC GACCGCGCTT TCATGGGCGG CCGACAACAT CCAGGTCAAT
GCCATCTTGC CGGGCTGGTT CGAGACCGAG CTGACCGACG GCGCCCGCAG CCAGATCCCG
GGCCTCTACG ACCGCGTGGT GGCCCGCGCC GCTGCCGGAC GCTGGGGCCA GCCGGCCGAC
ATCGCCGGCA CTGCGGTGTT CCTTGCGAGC GCCGCCTCCG ACTACGTGAC CGGCACCGCG
ATCCCGGTCG ACGGCGGATT CTCCATTTCT GGCTGA
 
Protein sequence
MFDLTGKAAL VTGGNGGIGL GMAQGLAKAG ARVVIAARNM QKSAAAVEAL RALGSDSFAL 
EVDVADEASV QKAVDEAAAR CGRLDILVNN AGTTVRKPVD QLALDEWRLV LDTNLTSAFL
CSRAAHPHLK AAGGKIINIG SMMSIFGAPY APAYAASKAG IVQLTKSTAL SWAADNIQVN
AILPGWFETE LTDGARSQIP GLYDRVVARA AAGRWGQPAD IAGTAVFLAS AASDYVTGTA
IPVDGGFSIS G