Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1215 |
Symbol | |
ID | 7973385 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1328082 |
End bp | 1329023 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644791812 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_002943132 |
Protein GI | 239814222 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTCGCT ATCTTGCTTC CCGCGCCGCC GGCATGCTCG TCGTGCTCGC GATCGTGGCG GTGCTCGTCT TCGTGCTCAC GCGCGCGGCC TCGGGCGATC CGGTCTCGGT GCTGCTGGGC GACCAGGCGA CGGCCGCCGA CATCGCGCGC GTGCAGAAGG AATACGGCCT GGACAAGCCG CTGCCCGTGC AGTTCGGCTA CTGGCTGCGC GAAGTGCTGC AGGGCAACCT CGGCACCTCG ATCTTCCTGC AGCGGCCGGT CACGCAGGCG CTGTGGGAGC GGGCCGAACC GACCACGCTG CTCGCGCTGA TGGCCGTGGC CATCGCGGCG CTGATCGGCG TGCCCTGCGG CATCGTCTCG GCGGTGTTCC GCGGGCGCGT GGTCGACCAG CTCTTCACCG GCATTGCGAT GCTGGGCGCC AGCATTCCGA GCTTCTGGCT CGGCATCGTG CTGATCCAGA TCTTTGCGGT GTCCTTCGGC TGGTTTCCTG TCTCGGGCTA CGGCGCGCCC GATGCGCCGT TCGCCGAACG CTTGCATGCG CTGGTGCTGC CGGCCACGGT GCTGGGCCTC TTGAACTCGG CGCTCATCAT CCGCTTCACG CGCGCTTCGA TGCTCGACGT GCTCGGCGAA GACTATGTGC GCACCGCGCG TTCCAAGGGC CTGAGCGAAA GCACCGTCGT GCTCAAGCAT GCGCTGCGCA ATGCGCTGGT GCCCATCGTC ACGGTGATCG GCCTCACGGT CGCGCTGATG ATCGGCGGCG CCGTCATCAC CGAGACCGTG TTCGGGCTGC CGGGTGTCGG CAACCTGGTG GTGAGCGCGG TGCTGCGGCG CGACTATCCG GTGATCCAGG GCGCGCTGCT CGTGATTGCG GCGATCTACG TGCTGATCAA TTTCTCCATC GACCTGCTCT ACGCCGTCGT CGATCCGCGC GTGAAAGTCT GA
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Protein sequence | MFRYLASRAA GMLVVLAIVA VLVFVLTRAA SGDPVSVLLG DQATAADIAR VQKEYGLDKP LPVQFGYWLR EVLQGNLGTS IFLQRPVTQA LWERAEPTTL LALMAVAIAA LIGVPCGIVS AVFRGRVVDQ LFTGIAMLGA SIPSFWLGIV LIQIFAVSFG WFPVSGYGAP DAPFAERLHA LVLPATVLGL LNSALIIRFT RASMLDVLGE DYVRTARSKG LSESTVVLKH ALRNALVPIV TVIGLTVALM IGGAVITETV FGLPGVGNLV VSAVLRRDYP VIQGALLVIA AIYVLINFSI DLLYAVVDPR VKV
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