Gene Vapar_1215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1215 
Symbol 
ID7973385 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1328082 
End bp1329023 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content67% 
IMG OID644791812 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002943132 
Protein GI239814222 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTCGCT ATCTTGCTTC CCGCGCCGCC GGCATGCTCG TCGTGCTCGC GATCGTGGCG 
GTGCTCGTCT TCGTGCTCAC GCGCGCGGCC TCGGGCGATC CGGTCTCGGT GCTGCTGGGC
GACCAGGCGA CGGCCGCCGA CATCGCGCGC GTGCAGAAGG AATACGGCCT GGACAAGCCG
CTGCCCGTGC AGTTCGGCTA CTGGCTGCGC GAAGTGCTGC AGGGCAACCT CGGCACCTCG
ATCTTCCTGC AGCGGCCGGT CACGCAGGCG CTGTGGGAGC GGGCCGAACC GACCACGCTG
CTCGCGCTGA TGGCCGTGGC CATCGCGGCG CTGATCGGCG TGCCCTGCGG CATCGTCTCG
GCGGTGTTCC GCGGGCGCGT GGTCGACCAG CTCTTCACCG GCATTGCGAT GCTGGGCGCC
AGCATTCCGA GCTTCTGGCT CGGCATCGTG CTGATCCAGA TCTTTGCGGT GTCCTTCGGC
TGGTTTCCTG TCTCGGGCTA CGGCGCGCCC GATGCGCCGT TCGCCGAACG CTTGCATGCG
CTGGTGCTGC CGGCCACGGT GCTGGGCCTC TTGAACTCGG CGCTCATCAT CCGCTTCACG
CGCGCTTCGA TGCTCGACGT GCTCGGCGAA GACTATGTGC GCACCGCGCG TTCCAAGGGC
CTGAGCGAAA GCACCGTCGT GCTCAAGCAT GCGCTGCGCA ATGCGCTGGT GCCCATCGTC
ACGGTGATCG GCCTCACGGT CGCGCTGATG ATCGGCGGCG CCGTCATCAC CGAGACCGTG
TTCGGGCTGC CGGGTGTCGG CAACCTGGTG GTGAGCGCGG TGCTGCGGCG CGACTATCCG
GTGATCCAGG GCGCGCTGCT CGTGATTGCG GCGATCTACG TGCTGATCAA TTTCTCCATC
GACCTGCTCT ACGCCGTCGT CGATCCGCGC GTGAAAGTCT GA
 
Protein sequence
MFRYLASRAA GMLVVLAIVA VLVFVLTRAA SGDPVSVLLG DQATAADIAR VQKEYGLDKP 
LPVQFGYWLR EVLQGNLGTS IFLQRPVTQA LWERAEPTTL LALMAVAIAA LIGVPCGIVS
AVFRGRVVDQ LFTGIAMLGA SIPSFWLGIV LIQIFAVSFG WFPVSGYGAP DAPFAERLHA
LVLPATVLGL LNSALIIRFT RASMLDVLGE DYVRTARSKG LSESTVVLKH ALRNALVPIV
TVIGLTVALM IGGAVITETV FGLPGVGNLV VSAVLRRDYP VIQGALLVIA AIYVLINFSI
DLLYAVVDPR VKV