| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1210 |
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| Symbol | |
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| ID | 7973380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1323287 |
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| End bp | 1324543 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791807 |
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| Product | lipoprotein releasing system, transmembrane protein, LolC/E family |
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| Protein accession | YP_002943127 |
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| Protein GI | 239814217 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGACTTC CTTATGAACT GAAGCTCGGC TGGCGCTACA CGCGCGCAGG CCGGGCGACG
CGGCGCAACG GCTTCATCTC GTTCATCTCC GGCGTGTCGA TGCTCGGCAT TGCATTGGGG
GTGGCGGCGC TGATCATCGT GCTCAGTGTG ATGAACGGCT TCCAGAAGGA GGTGCGCGAC
CGCATGCTCG GCGTGGTGTC GCACATCGAA ATCTTGTCGC GCGACGGCCA GGCGCTGCCC
GACATCGACG CCATCACGGC CGCCGCGCGC AAGAACCCCG AGGTGGTCGG CGCCGCGCCC
TTCATTGCCA CGCAGGCGCT CATTGCGCGC GGCGAGGACA TGAAGGGCAC GCTGGTGCGC
GGCATCGTGC CCAGGCTCGA ACCCGAGGTG ACCGACATCG CCACGACGGC GCAGAAGGGC
ACGCTCGACA AGCTGGTGCC GGGCGAGTTC GGCATCGTGC TTGGCGGCGA ACTCGCGCGC
TCGCTGTTCG TGCAGCCGGG CGACCAGGTC ACGCTGGTGG CGCCGGGCGG TCAGGTCACG
CCCGCCGGCG TGGTGCCGCG GCTCAAGCAG TTCACGGTGG TGGGCACCTT CGATTCGGGC
CACTACGAAT ACGACTCGGC GCTGGCCATG ATCCATGCGG AAGACGCCCA GCGCGTGTTC
CGGCTCGAAG GCCCGACCGG CATCCGCATC AAGCTCAAGG ACCTGAACGA GGCGCGCGAA
GTGGCCGACC AGATGGCCGT CACGCTGCCG GGCCAGTTCC TCATCCGCGA CTGGACGCGC
CAGAACAAGA CATGGTTTGC GGCCGTGCAG GTCGAGAAAC GCATGATGTT CATCATCCTC
ACGCTCATCG TGGCGGTGGC GGCCTTCAAC CTGGTGTCCA CGCTGGTCAT GACGGTGACC
GACAAGCGCG CGGACATCGC CATCCTGCGC ACGCTGGGCA GTTCGCCGCG CAGCATCATG
GGCATCTTCG TGGTGCAGGG CGCGATGGTC GGCGTGATCG GCACGGTGGC CGGGCTGCTG
CTGGGGCTGG GCATTGCCTA CAACATCGAC GTGATCGTGC CGGCGCTCGA ACAGCTCTTC
CACGCGAGCT TCCTGCCCAA GGACATCTAC CTGATCAGCA AGATGCCGAG CGATCCGCAG
CGCGGCGACA TCATGCCGAT CGCGATCATT TCACTGGTCC TGGCTTTTCT TGCAACGCTG
TATCCCAGCT GGCGCGCGAG CCGCGTCAAC CCTGCCGAGG CATTGCGCTA TGAGTGA
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| Protein sequence | MRLPYELKLG WRYTRAGRAT RRNGFISFIS GVSMLGIALG VAALIIVLSV MNGFQKEVRD
RMLGVVSHIE ILSRDGQALP DIDAITAAAR KNPEVVGAAP FIATQALIAR GEDMKGTLVR
GIVPRLEPEV TDIATTAQKG TLDKLVPGEF GIVLGGELAR SLFVQPGDQV TLVAPGGQVT
PAGVVPRLKQ FTVVGTFDSG HYEYDSALAM IHAEDAQRVF RLEGPTGIRI KLKDLNEARE
VADQMAVTLP GQFLIRDWTR QNKTWFAAVQ VEKRMMFIIL TLIVAVAAFN LVSTLVMTVT
DKRADIAILR TLGSSPRSIM GIFVVQGAMV GVIGTVAGLL LGLGIAYNID VIVPALEQLF
HASFLPKDIY LISKMPSDPQ RGDIMPIAII SLVLAFLATL YPSWRASRVN PAEALRYE
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