| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1208 |
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| Symbol | |
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| ID | 7973378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1320465 |
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| End bp | 1322186 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791805 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_002943125 |
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| Protein GI | 239814215 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGATCA TTGCCCGCGA AATTCCGCCC CGCACGGTCT GGGCGCTCGA GCAGGCCGGC
GTGCATCCGC TGCTGGCCCG CCTGTTCGCC GCGCGCGGCG TGCTGGCCAA GGACGAGCTC
GACGACGGCC TGGCGCGCCT GCTGCCGCCC GACACGCTGC ACGGCACGCG CGAGGCCGCG
GTGCTGCTGG CCGACGCGAT GGCGCAGGAC AAGCGCCTGT GCATCGTGGC CGACTACGAC
TGCGACGGCG CCACCGCCTG CGCCGTCGCG GTGCGCGGCC TGCGCCTGCT CGGCGCGAAG
AACGTGAGCT ACCTGGTGCC CGACCGCGTG GTCGACGGCT ACGGCCTCAC GCCGCCGATT
GCCGAGCGCG TGGCCGACAG TGGCGCCGAC ATGCTGATCA CCGTCGACAA CGGCATCGCC
AGCGTCGAGG GTGTGGCCGC CGCCAAGGCG CGCGGCCTGC AGGTGCTGGT GACCGACCAC
CACCTGCCCG GCCCCGAGCT GCCGGCCGCC GACGTGCTGG TGAATCCCAA CCAGCCCGGC
TGCAGCTTCG AGAGCAAGAG CATCGCCGGT GTCGGCGTGA TGTTCTACGT GCTGCTGGCG
CTGCGCTCCG AGCTGCGCGC GCGCGGCGTC TTCAGCGCGG CCGCGCAGCC CAAGCTCGAC
GTGCTGCTCC CGCTGGTGGC GCTCGGCACC GTGGCCGACG TGGTGAAGCT CGACGCCAAC
AACCGCCGCC TGGTGGCACA GGGCCTGCGG CGCATCCGCG CCGGCGCGCT GCCCGCGGGC
ATCGCGGCGC TGTTCAAGGC CGCGGGGCGC AACGCCGCGG TGGCCACCAC CTTCGACTTC
GGCTTTGCGC TCGGCCCGCG CATCAACGCG GCCGGCCGGC TCGCCGACAT GACGCTGGGC
ATCGAATGCC TGCTGACCGA CGATGCCGGC CGCGCCGACG AACTCGCGCG CATGCTCGAC
GGCATCAACC GCGAGCGGCG CGACATCGAG GGCGGCATGC GCGACCAGGC GCTGCTGCTG
GCCGAATCGC TGTTCGGTGC CACCGCCGAC GGCAGCGAGG CGCCGCCCGC AGCCATCAGC
GTGTTCGATG CCGACTTCCA CGAAGGCGTG GTCGGCATCG TGGCCTCGCG CATCAAGGAC
CGCTTCCACC GCCCGACCTT CGTCTTTGCC GCCAGCGGCG CGCCCGGCAA GGAGCACGAG
CTCAAGGGCT CGGGCCGGTC GATCCCGGGC TTCCATCTGC GCGATGCGCT CGACCTTGTG
GCCAAGCGCC ATCCGGGCGT GCTGCTGCGC TTCGGCGGCC ATGCCATGGC TGCCGGCTGC
ACCGTGGCGC GCGAGAAGTT CGAGGTGTTC GAGCGCGCGC TGGCCGAGGT CGCACATGAA
TGGCTGGCCG CCTCCGCGCT CACGCGCCAG ATCGAAACGG ATGGGCCGAT CGCGCGCGAG
TACATGCGCA TCGACCTGGT CGACACGCTG CACCGCGAGG TGTGGGGCCA GGGCTTCGCG
CCGCCCACCT TCAGCGAGGA AGTCGAAGTG GTGTCGCAGC GCCTCGTGGG CGAGAAGCAC
CTGGCGCTCA AGCTGCGGCA CCAGGGACAG CCGGTCGACG GCATCTGGTT CGGCCACACC
GAGCCGCTGC CCGCGCGCGT GAAGCTCGCC TTCAGGCTCG ATGCCGACGA ATGGCAGGGT
GTGCGCCGGG TGCGCTTCCT TGTCGAAGGC GCTGAGATCT AG
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| Protein sequence | MKIIAREIPP RTVWALEQAG VHPLLARLFA ARGVLAKDEL DDGLARLLPP DTLHGTREAA
VLLADAMAQD KRLCIVADYD CDGATACAVA VRGLRLLGAK NVSYLVPDRV VDGYGLTPPI
AERVADSGAD MLITVDNGIA SVEGVAAAKA RGLQVLVTDH HLPGPELPAA DVLVNPNQPG
CSFESKSIAG VGVMFYVLLA LRSELRARGV FSAAAQPKLD VLLPLVALGT VADVVKLDAN
NRRLVAQGLR RIRAGALPAG IAALFKAAGR NAAVATTFDF GFALGPRINA AGRLADMTLG
IECLLTDDAG RADELARMLD GINRERRDIE GGMRDQALLL AESLFGATAD GSEAPPAAIS
VFDADFHEGV VGIVASRIKD RFHRPTFVFA ASGAPGKEHE LKGSGRSIPG FHLRDALDLV
AKRHPGVLLR FGGHAMAAGC TVAREKFEVF ERALAEVAHE WLAASALTRQ IETDGPIARE
YMRIDLVDTL HREVWGQGFA PPTFSEEVEV VSQRLVGEKH LALKLRHQGQ PVDGIWFGHT
EPLPARVKLA FRLDADEWQG VRRVRFLVEG AEI
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