| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1183 |
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| Symbol | |
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| ID | 7973352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1293074 |
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| End bp | 1294234 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791779 |
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| Product | HtrA2 peptidase |
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| Protein accession | YP_002943100 |
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| Protein GI | 239814190 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGCA CCTGGCTGCT CTTTGCCCAA GCCGTGACCG TCCTTTTGGC GGCCTACTTC
GTTGTTGCCA CGCTCAAGCC CGAGTGGATC AACCGCCGCG CCACCTCGCT GGGCGGCGTG
GTCTCGATCG TCGAGGCGCC TGCGGGCGCC CCCGCGGTGC CGGCGGCCGG CAGCCTGAGC
GCGGCCGCAA AGAAAGCCTC GCCGGCCGTC GTGAGCATCA ACACCAGCAA GGCGGCGCAG
CGCCATCCCC GCAGCAACGA TCCGTGGTTC CGCTTTTTCT TCGGCGACCA GGGCGACCAG
CCCCAGGTCG GCCTGGGCAG CGGCGTGATC GTGAGCGCCG AGGGCTACAT CCTCACCAAC
AACCACGTGG TCGAAGGCGC GGACGAGATC GAGGTCACCC TCAACGACAG CCGCCACACG
CGCGCCAAGG TGATCGGCAC CGACCCGGAC ACCGACCTTG CCGTGCTCAA GATCGAGATG
GACAAGCTGC CCGCGATCGT GCTGGGCAAT TCCGACGAGC TCCAGGTGGG CGACCAGGTG
CTGGCCATCG GCAATCCCTT CGGCGTGGGC CAGACGGTCA CCAGCGGCAT CGTCTCGGCG
CTCGGGCGCA ACCAGCTCGG CATCAACAAC TTCGAGAACT TCATCCAGAC CGACGCGGCC
ATCAACCCCG GCAATTCGGG CGGCGCGCTG ATCGACGTCA ACGGCAACCT GCAGGGCGTC
AACACCGCCA TCTATTCACG CTCGGGCGGC AGCATGGGCA TCGGCTTCGC GATTCCCGTT
TCCATGGCAA AGATCGTGCT CGAGGGCATC GTGAAGGACG GCCAGGTGCG CCGCGGCTGG
ATCGGCGTCG AGCCGAACGA ACTCTCGCCC GAGCTGGCCG AGACCTTCGG CGTGAAGGCC
GATGCCGGCG TCATCATCAC CGGCGTGCTG CAGAACGGGC CGGCAGCCAA GGCCGGCATC
CGGCCGGGCG ACGTGATCAC CTCGGTCGGC GAAAAGAAGA CCGACAACGT GCAGGCCCTG
CTGACCGCCG TGGCCGGCCT CAAGCCCGGC AGCACCACGC GCTTCGCACT GCAGCGCGGC
ACCGACAAGA TGGAGCTGGA CGTGACGCCG GGCCTGCGGC CCAAGAGCCC GATGCGGCAG
GTGCCGAACC AGCCCGAGTG A
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| Protein sequence | MKRTWLLFAQ AVTVLLAAYF VVATLKPEWI NRRATSLGGV VSIVEAPAGA PAVPAAGSLS
AAAKKASPAV VSINTSKAAQ RHPRSNDPWF RFFFGDQGDQ PQVGLGSGVI VSAEGYILTN
NHVVEGADEI EVTLNDSRHT RAKVIGTDPD TDLAVLKIEM DKLPAIVLGN SDELQVGDQV
LAIGNPFGVG QTVTSGIVSA LGRNQLGINN FENFIQTDAA INPGNSGGAL IDVNGNLQGV
NTAIYSRSGG SMGIGFAIPV SMAKIVLEGI VKDGQVRRGW IGVEPNELSP ELAETFGVKA
DAGVIITGVL QNGPAAKAGI RPGDVITSVG EKKTDNVQAL LTAVAGLKPG STTRFALQRG
TDKMELDVTP GLRPKSPMRQ VPNQPE
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