| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1153 |
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| Symbol | gltD |
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| ID | 7973322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1269870 |
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| End bp | 1271348 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791749 |
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| Product | glutamate synthase subunit beta |
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| Protein accession | YP_002943070 |
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| Protein GI | 239814160 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAAGA TCACCGGCTT CATGGAGCAT GAGCGCATCG AAGAGGGCTA CAAGCCTGCC
TCCGAGCGCG TCAAGCACTA CAAGGAATTC GTCGTCGGCC TGGATGCCGA GCAAGCCAAG
GTCCAGGGCG CGCGCTGCAT GGACTGCGGC ACGCCGTTCT GCAACAGCGG CTGCCCGGTC
AACAACATCA TTCCGGACTT CAACGACCTC GTGTACCGCA ACGACTGGCA GAACGCCTTC
GCGGTGCTCG ACTCGACCAA CAACTTCCCG GAATTCACCG GCCGCATCTG CCCCGCGCCC
TGCGAGGCGG CCTGCGTGCT CAACGTGAAC GACGACCCGG TCGGCATCAA GTCGCTGGAG
CACGCGATCA TCGACCGCGC CTGGGACGAA GGCTGGGTGG CGCCGCGCGT CGCCAAGCAC
AAGACCGGCA AGAAGGTGGC TGTGGTGGGT TCGGGCCCGG CCGGCATGGC GGCGGCGCAG
CAGCTCGCGC GCGCCGGCCA CGACGTGACG CTGTTCGAGA AGAACGACCG CATTGGCGGC
CTGCTGCGCT ACGGCATCCC CGACTTCAAG ATGGAGAAGA CCCACATCGA CCGCCGCGTC
GAGCAGATGA AGGCCGAGGG CGTGAGCTTC CGCACCGGCG TGATGGTCGG CGCCGCGAAG
GACCCGCTGG GCAAGGGCTC CAAGGTCACC AACCTGGCCA AGGAAACCGT CACGCCCGAG
CAGCTGCAGA AAGACTTCGA CGCCGTGGTG CTCACGGGCG GCGCCGAGCA GTCGCGCGAC
CTGCCGGTGC CGGGCCGCGA CCTCGACGGC ATTCATTTTG CGATGGAGTT CCTGCCGCAG
CAGAACCGCG TCAACGCGGG CGACAAGGTC AAGGGCCAGT TGCGCGCGGA TGGCAAGCAC
GTGATCGTGA TCGGCGGCGG CGACACCGGC TCCGACTGCG TGGGCACCAG CAACCGCCAT
GGCGCGGCCA GCGTCACGCA GTTCGAACTG ATGCCGCAGC CACCCGAGGA AGAAAACCGC
CCGCTGACCT GGCCCTACTG GCCGATCAAG CTGCGCACCA GCTCCAGCCA TGAAGAGGGC
TGCGAGCGCG AGTTCGCCAT CTCCACCAAG GAATTCATCG GCGAAAAAGG CAAGGTCACG
GGCCTGAAGA CCGTGCGCGT CGAGTGGAAA GACGGCCGCA TGCAGGAAGT GGCCGGCAGC
GAGCAGATCC TCAAGGCCGA CCTCGTGCTG CTGGCGATGG GCTTCATCAG CCCCGTGGCC
ACCGTGCTGG ACGCCTTCGG CGTCGAGAAG GACGCACGCG GCAACGCCAA GGCGACGGTC
GATTTCATCG GCGGCTATGC CACCAACGTG CCGAAGGTGT TTGCGGCGGG CGACATCCGC
CGCGGCCAGT CGCTGGTGGT CTGGGCCATT CGCGAGGGCC GCCAGGCCGC GCGCTCGGTG
GATGAATTCC TGATGGGATT CAGCGACCTG CCGCGCTGA
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| Protein sequence | MGKITGFMEH ERIEEGYKPA SERVKHYKEF VVGLDAEQAK VQGARCMDCG TPFCNSGCPV
NNIIPDFNDL VYRNDWQNAF AVLDSTNNFP EFTGRICPAP CEAACVLNVN DDPVGIKSLE
HAIIDRAWDE GWVAPRVAKH KTGKKVAVVG SGPAGMAAAQ QLARAGHDVT LFEKNDRIGG
LLRYGIPDFK MEKTHIDRRV EQMKAEGVSF RTGVMVGAAK DPLGKGSKVT NLAKETVTPE
QLQKDFDAVV LTGGAEQSRD LPVPGRDLDG IHFAMEFLPQ QNRVNAGDKV KGQLRADGKH
VIVIGGGDTG SDCVGTSNRH GAASVTQFEL MPQPPEEENR PLTWPYWPIK LRTSSSHEEG
CEREFAISTK EFIGEKGKVT GLKTVRVEWK DGRMQEVAGS EQILKADLVL LAMGFISPVA
TVLDAFGVEK DARGNAKATV DFIGGYATNV PKVFAAGDIR RGQSLVVWAI REGRQAARSV
DEFLMGFSDL PR
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