| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1123 |
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| Symbol | |
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| ID | 7969645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1234043 |
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| End bp | 1235233 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791719 |
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| Product | PepSY-associated TM helix domain protein |
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| Protein accession | YP_002943040 |
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| Protein GI | 239814130 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGCC GAAAGATCAA GACCTGGGCC TGGGTGCACA AGTGGAGCAG CCTCGTATGC
ACCGTGTTCA TGCTGCTCCT GTGCATCACG GGCTTGCCGC TGATCTTCCA TCACGAGATC
GGCCACCTGC TGGGCACCGA GGTCGAGTCG CCCAGGATGC CCGCGAACAC GCCGCGCGTG
AGCCTGGACC GCGTGCTCGA AACCGCGCGT GCGAAGCACC CCGACCGCGT GGTGCAGTTC
GTTTCGCAGC CCGAGGACGA CGATGGCCTC TGGTTCGTCA CGCTCACGCC AACGCCCGCA
CCCACGGACG ACTTCAAGTC GGTGGCGGTG GACGCGCGCA CCGGCGCCGT GCTTGCGCAG
CCCAAGCTCG ACGAGGGCTT CATGTACGTG ATGTTCAAGC TGCACGTCGA CCTGTTCGCC
GGCCTCGCGG GCAAGCTGTT CCTGGGTTTC ATGGGCTTGC TGCTGCTGGT GGCCATCGTC
TCCGGCGTGG TGCTCTATGC GCCCTTCATG CGCAAGCTCG ACTTCGGCAC CGTGCGGCGC
GAGAAGCGCC CGCGCCTGAA GTGGCTCGAC CTGCACAACC TGCTGGGCAT CGTCACGCTG
GTGTGGCTGT TCGTGGTGGG CTCCACCGGC ATGATCAACA CCTGGGCCGA CCTGGTCATC
AAGTACTGGC AGTACGACCA GCTCAGCGCG CTTCTCGCGC CCTACAAGGA CGAGCCGACG
GTGCCCGTGG CCCAGCGCGC ATCGGTGCAG CGCTCGATGG AGGTCGCGCT CCAGCAGACG
CCCGGCATGA AGCTGTCCTT CGTCGCGTTT CCCGGCACGG CGTTCTCGAG CCCGCACCAC
ACCACCTTCT TCATGCGCGG CAGCGAGCCC TTCACCTCGA AGCTGCTGCA GCCGGTGCTG
GTCGACGCCA AGACGGCGCA AGTGACCGCC GCGCCGAAGA TGCCCTGGTA CCTGACGGCG
CTGCTGGTGT CGCAGCCGCT GCACTTCGGC GACTACGGCG GCATGCCGAT GCAGATCATC
TGGGCGCTGC TCGACATCGC GACCATCATC GTGCTGGGCA GCGGGCTGTA CCTGTGGCTC
AAGCGCGGGA ACAGCGTGCC TGCTGCGGCC TCGCCGGCGG GACAGCGGCC GCCGCATGGC
GGACCACATC AGCAGCCTGA ACCGGCGCCC GCCATGAAGG TGCAGGCATG A
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| Protein sequence | MNSRKIKTWA WVHKWSSLVC TVFMLLLCIT GLPLIFHHEI GHLLGTEVES PRMPANTPRV
SLDRVLETAR AKHPDRVVQF VSQPEDDDGL WFVTLTPTPA PTDDFKSVAV DARTGAVLAQ
PKLDEGFMYV MFKLHVDLFA GLAGKLFLGF MGLLLLVAIV SGVVLYAPFM RKLDFGTVRR
EKRPRLKWLD LHNLLGIVTL VWLFVVGSTG MINTWADLVI KYWQYDQLSA LLAPYKDEPT
VPVAQRASVQ RSMEVALQQT PGMKLSFVAF PGTAFSSPHH TTFFMRGSEP FTSKLLQPVL
VDAKTAQVTA APKMPWYLTA LLVSQPLHFG DYGGMPMQII WALLDIATII VLGSGLYLWL
KRGNSVPAAA SPAGQRPPHG GPHQQPEPAP AMKVQA
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