| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1120 |
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| Symbol | |
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| ID | 7969642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1227946 |
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| End bp | 1230051 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791716 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002943037 |
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| Protein GI | 239814127 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGATTCC GCATCCGGTC GTCACGCATC GCCTTTGCCT TGCTCCCCCT CGCTTCCATT
TCCCCGCTCT CCATGGCACA AGGCACCGGC AACGGACAGC CGGACCCGGC GAGCACATCG
CTGCCCGAAG TGCATGTGGT CGCCGAGCCC GAATCCGGCG GCTACAACCC CACGACCAGC
AGCGGTGCCA CGCGCACCAG CACGCTGCTG CGAGAGGTGC CGCAGTCGGT GCGCATCGTC
TCCAGCCAGC TGATCGAGGA CATGGGTGCA ACGCGACTGG CCGACACGGT GGATCTTGTG
AGCGGGATCA CGCGCCTCAA CGACTTCGGC GGCACCTGGG ACAACTTCGG CATCCGCGGG
TTCAGCAGTA CCGACATGGG ATTCCTGGTC AACGGTTTCC CCGGATCGCG CGGCTACAAC
CCGCCGCGCG ACACCGCCAC GGTCGAGCGC TTCGAATTCC TCAAGGGGCC GGCGTCGGCC
ATCTACGGCA GCAGCGAGCC GGGCGGCACC ATCAACATCG TCACGAAGAA GCCGGAGTTC
ACGCGCCGCA ACACGGCCGA CTTCAGCATC GGCAGCCAGG GCCTGCGCCG CAGCACGCTG
GACAGCACCG GCGCGCTGAG CCGGAACGTG GCCTACCGGC TGAACCTGGC GGTGGAGGAA
GGCGACAGCC GAAGCGACCT GCTGAGCAAC AGGCGCACCC TGGTGGCACC CGCGCTGACC
TGGGTCATCG ACGACAAGAC AGTGCTCAAC TACGAGTCCG AATTCCTGCG TTCGAAAACG
CCGCTGGACC GCGGGCTGAT CAATGTTCGC GGCCTGCTCG GAACCTTGCC GCGCGACCGT
GTGCTCAATG AGCCCGACGA CGGCAACATG ACGCTCACCA GCAATACGCA CCAGCTCACG
CTGGACCGCC AGCTGTCGGA AAACTGGCGC GCGCGCATCG GTGCGAGCTA CAAGGAAAGC
ACCTTCTCCG GCAACTACAC CGAAGCGACT TCGCTCGCCA GCGACAACCG GACGCTCAAC
CGCCGCGCCA CCTGGCGCCA GCTGCCGTCG CGCGACACGT CCTTCCAGGC GGAGCTGGAA
GGCAAGTTCG CGACCGGCGC CCTGGCCCAC ACGCTGCTGG TCGGCGTGGA AGCGTCCAGG
CTGTGGATGA ACACCGAAAT CCTCCGCTCG GGCAACTACC CGATCGACAT CTACCAGCCT
GTCTATGGCA AGCCCCGGCC GCCGCTCACC TCGCTCACCT CCAGCTCGGA CGAGCACCAG
CGCGCGAGCG CGGTTTTCCT GCAGGACCAG ATCAGCCTTT CGCCGCAGTG GAAGCTGCTG
GTGGGCGCCC GCTACGACCA TTTCAGGCAG CGCATCGAGG ACCGCGTGAA CCGCAACAGC
GCCCAGAAGC ATGATGCTGT TTCGCCGCGC GCCGGCCTCA CCTACCTGCC GAACGACTGG
AGCTCCTGGT ACGTCTCGGC CGGCAAGTCG TTTCGCGGCA ACAGCGGCAC CGACAAGAAC
GGCCAGGCCT TCGATCCGCA GCGTTCCACC GCGCTGGAGG CCGGCCTGAA GCTGCAGACG
CCGGACCAGC GCCTGGGCGC CAACCTGGCC GTGTTCGACA TCAAGAAGAC CAACGTGCTG
ACGGCCAGCG ACACGCCCGG CTTCTCCGTG GCGGCCGGCG AGGTCAAGAG CAGCGGCTTC
GAGGCAGACG TCTACGGCCA GATCGACAGG AACTGGCGGG TGAGCGGAAA TTTCGCCTAT
GTCGACGCCC GCATCTCGAA GGACGCAACG CTGGCGCCCG GCACGCGCAT CGTGAACATC
CCGAGGACGA GCGCCGGCCT GTTCGCCATC CGCGAGGATG CGCTGGCCGA CGGCAGCCGC
TATGGCGTGG GTGCCGGCAT CAACTACGTG GGCAACCGTT CGGGCAACAG CGCCGACACC
TACTCGCTGC CGGCCTACAC CACCGTCAAG CTGGTGAGCT TCTGGCAGAT CAACAAGACC
GCCCGCGTGT CGATCGACGT GCACAACCTC TTCAACCGGA ACTTCTACAC CGCCTCGTGG
GGCAACCTGT ACGTGATTCC GGGCGCCAGG CGCAGCGTCG TGGCCAGCCT GAAGCTGGAC
CTCTGA
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| Protein sequence | MRFRIRSSRI AFALLPLASI SPLSMAQGTG NGQPDPASTS LPEVHVVAEP ESGGYNPTTS
SGATRTSTLL REVPQSVRIV SSQLIEDMGA TRLADTVDLV SGITRLNDFG GTWDNFGIRG
FSSTDMGFLV NGFPGSRGYN PPRDTATVER FEFLKGPASA IYGSSEPGGT INIVTKKPEF
TRRNTADFSI GSQGLRRSTL DSTGALSRNV AYRLNLAVEE GDSRSDLLSN RRTLVAPALT
WVIDDKTVLN YESEFLRSKT PLDRGLINVR GLLGTLPRDR VLNEPDDGNM TLTSNTHQLT
LDRQLSENWR ARIGASYKES TFSGNYTEAT SLASDNRTLN RRATWRQLPS RDTSFQAELE
GKFATGALAH TLLVGVEASR LWMNTEILRS GNYPIDIYQP VYGKPRPPLT SLTSSSDEHQ
RASAVFLQDQ ISLSPQWKLL VGARYDHFRQ RIEDRVNRNS AQKHDAVSPR AGLTYLPNDW
SSWYVSAGKS FRGNSGTDKN GQAFDPQRST ALEAGLKLQT PDQRLGANLA VFDIKKTNVL
TASDTPGFSV AAGEVKSSGF EADVYGQIDR NWRVSGNFAY VDARISKDAT LAPGTRIVNI
PRTSAGLFAI REDALADGSR YGVGAGINYV GNRSGNSADT YSLPAYTTVK LVSFWQINKT
ARVSIDVHNL FNRNFYTASW GNLYVIPGAR RSVVASLKLD L
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