| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1118 |
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| Symbol | groEL |
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| ID | 7969640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1225781 |
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| End bp | 1227433 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644791714 |
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| Product | chaperonin GroEL |
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| Protein accession | YP_002943035 |
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| Protein GI | 239814125 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
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| TIGRFAM ID | [TIGR02348] chaperonin GroL |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAA AAGACGTAGT CTTCGGCGGT GAAGCCCGCG CACGCATGGT CGAGGGTGTC
AACATCCTCG CCAACGCCGT CAAGGTGACC CTGGGCCCCA AGGGCCGCAA CGTGGTGCTC
GAGCGCTCGT TCGGCGCCCC CACCGTCACC AAGGACGGTG TGTCGGTCGC CAAGGAAATC
GAACTCAAGG ACAAGCTCCA GAACATGGGC GCCCAGCTCG TGAAGGAAGT GGCCTCCAAG
ACCAGCGACA ACGCCGGTGA CGGCACCACC ACCGCCACGG TGCTGGCCCA GGCCATCGTT
CGCGAAGGCT TCAAGTACGT GGCCGCCGGC ATCAACCCGA TGGACCTGAA GCGCGGCATC
GACAAGGCCG TGACGGCCCT GGTCGAAGAG CTGAAGAAGG CTTCCAAGCC CACCACCACG
TCGAAGGAAA TCGCTCAAGT CGGCTCGATC TCGGCCAACA GCGACGAAAC CATCGGCAAG
CTCATCGCTG ACGCGATGGA CAAGGTCGGC AAGGAAGGCG TGATCACCGT GGAAGACGGC
AAGTCGCTGG ACAGCGAACT CGACGTCGTC GAAGGCATGC AGTTCGACCG CGGCTACCTG
TCGCCCTACT TCATCAACAA CCCCGAGAAG CAATCGGCGC TGCTCGACAA CCCCTTCGTG
CTGCTGTTCG ACAAGAAGAT CAGCAACATC CGCGACCTGC TCCCCACGCT GGAACAAGTC
GCCAAGGCTG GCCGTCCGCT CCTGATCATT GCCGAAGAAG TCGAAGGCGA AGCCCTGGCT
ACGCTGGTGG TGAACACGAT CCGCGGCATC CTGAAGGTCG TGGCCGTGAA GGCACCTGGC
TTCGGCGACC GCCGCAAGGC CATGCTGGAA GACATCGCCA TCCTGACGGG CGGCAAGGTC
ATCGCTGAAG AAGTGGGCCT GACGCTCGAA AAGGTGACGC TGGCCGACCT GGGCCAAGCC
AAGCGCATCG AAGTGGGCAA GGAAAACACC ATCATCATCG ACGGTTCGGG CGCTGCGGCC
GACATCGAAG CCCGCGTGAA GCAAGTGCGC GTGCAGATCG AGGAAGCCAC GAGCGACTAC
GACCGTGAAA AGCTGCAAGA GCGCGTGGCC AAGCTGGCCG GCGGCGTTGC AGTGATCAAG
GTCGGCGCTG CCACCGAAGT CGAGATGAAG GAAAAGAAGG CACGCGTCGA AGACGCCCTG
CACGCCACCC GCGCTGCAGT GGAAGAAGGC GTTGTGGCCG GCGGCGGCGT GGCTCTGCTG
CGTGCCAAGC AAGCCGTGGG CGACAAGGTC AAGGGCGACA ACGCCGACCA GGACGCCGGC
ATCAAGCTGG TGCTCAAGGC CATCGAAGCG CCCCTGCGCG AAATCGTGAA CAACGCCGGC
GGCGAAGCCT CGGTGGTGGT GAACGCCGTG TTGGCCGGCA AGGGCAACTA CGGCTTCAAT
GCCGCCAACG ACACGTACGG CGACATGCTC GAGCTGGGCA TCCTGGATCC GACCAAGGTG
ACCCGCACCG CGCTGCAGAA CGCAGCATCG GTGGCTTCGC TGCTGCTGAC GACCGAAGCC
ATGGTCGCCG ACGCACCGAA GGAAGAAGCC GGTGCCGGCG GCGGCATGCC CGACATGGGC
GGCATGGGTG GTATGGGCGG CATGGGAATG TAA
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| Protein sequence | MAAKDVVFGG EARARMVEGV NILANAVKVT LGPKGRNVVL ERSFGAPTVT KDGVSVAKEI
ELKDKLQNMG AQLVKEVASK TSDNAGDGTT TATVLAQAIV REGFKYVAAG INPMDLKRGI
DKAVTALVEE LKKASKPTTT SKEIAQVGSI SANSDETIGK LIADAMDKVG KEGVITVEDG
KSLDSELDVV EGMQFDRGYL SPYFINNPEK QSALLDNPFV LLFDKKISNI RDLLPTLEQV
AKAGRPLLII AEEVEGEALA TLVVNTIRGI LKVVAVKAPG FGDRRKAMLE DIAILTGGKV
IAEEVGLTLE KVTLADLGQA KRIEVGKENT IIIDGSGAAA DIEARVKQVR VQIEEATSDY
DREKLQERVA KLAGGVAVIK VGAATEVEMK EKKARVEDAL HATRAAVEEG VVAGGGVALL
RAKQAVGDKV KGDNADQDAG IKLVLKAIEA PLREIVNNAG GEASVVVNAV LAGKGNYGFN
AANDTYGDML ELGILDPTKV TRTALQNAAS VASLLLTTEA MVADAPKEEA GAGGGMPDMG
GMGGMGGMGM
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