| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1116 |
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| Symbol | |
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| ID | 7969638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1223208 |
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| End bp | 1224185 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791712 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002943033 |
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| Protein GI | 239814123 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGCCGT CGCTTCCCGG CCTTGACCCC CGTGCTGCCA TGACAACGTC CACACGCAAA
CGCTCGATTC CCCGTCAGCG CCAACCCGAG CTGGAGCGCG ACATCGCGCG CTCCCCGTCG
CTGGGCTACG AGGCCCCCGA AACCGGCCTG GTGCGCTGCC TCGCGCACGG CTTTCCGAGC
CCGCTGGTGC GGTGGCACTT CCATGAAGAC TACGAGCTGC ACCTGATCAC CGAGACCTCG
GGCAAGGCCT TCATCGGCGA CTGGATCGGG CCGTTCCAGC CCGGGCACCT CGTGCTCTGC
GGGCCGCGGC TGCCGCACAA CTGGATCTCG CTGGACGTGC CCGAAGGCGG CGCCGCGGGC
CGCGACCGGG TGATCCAGTT CCGCCACGAG CCCATCGAGC GCGCCGCGGC CGAGATTCCG
GAGCTGCGCG ATGTGATGCA GCTGTTCGAG CGCGCGCGGC ACGGCATCGA GTTCTTCGGC
ATGTCGCAGC AGGCGCAGGC GCACTGGGAC AACATCAAGG CCGCGCGCGG CGTGCGCCGG
CTCGGGCTGT TCCTCGAGTT CATGGCCGAC CTCGCGCAAT GCACCGACTA CCGGCTGCTC
TCCAGCGTGC AGATGCAGGG CGCGCACGGC GTCGAAGGCG ATGCGCAGGT CGACCAGATC
AACGACATCG TCAACCGCAT CACCAGCAAC ATGGCGGAGC CGATCTCCAT GTCGGACGTG
GCGGCCGAAC TCGGCATGAG CGAAAGCCGC TTCAGCCGCT TCTTCCGGCG CTCCACCGGC
AACAGCTTCA CCGACTTCGT CAATCGCGTG CGCATCAACA GTGCCTGCCA CCTGCTGATG
CAGACCGACC ACTACGTGAC CGACATCTGC TACCAGGTCG GCTTCAACAA CGTGGCCAAC
TTCAACCGGC GCTTCCTCGA GATCAAGGGC ATGACCCCGA GCGAGTTCAG GCGCCAGGCC
GACACGCGGT TCGGCTGA
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| Protein sequence | MRPSLPGLDP RAAMTTSTRK RSIPRQRQPE LERDIARSPS LGYEAPETGL VRCLAHGFPS
PLVRWHFHED YELHLITETS GKAFIGDWIG PFQPGHLVLC GPRLPHNWIS LDVPEGGAAG
RDRVIQFRHE PIERAAAEIP ELRDVMQLFE RARHGIEFFG MSQQAQAHWD NIKAARGVRR
LGLFLEFMAD LAQCTDYRLL SSVQMQGAHG VEGDAQVDQI NDIVNRITSN MAEPISMSDV
AAELGMSESR FSRFFRRSTG NSFTDFVNRV RINSACHLLM QTDHYVTDIC YQVGFNNVAN
FNRRFLEIKG MTPSEFRRQA DTRFG
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