| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1097 |
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| Symbol | |
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| ID | 7969619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1202534 |
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| End bp | 1203547 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791693 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002943014 |
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| Protein GI | 239814104 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0890714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAGC TTTTTACTGC AGCGGCCTTG GTGGGTTTGT CGGCCGCCGC GTCGGCGCAG
GGCACGGTCA ACGTGATCTG CTCGGTCCAG GCCGAATGGT GCAACGTGAT CGCCACCGTG
TATGCACGCA CCACGGGTAC CCGCATCAAC ATGTCGCTCA AGGGCTCGGG CGAAGCGCTG
GCCCAGCTCA TCGCCGAGAA GGACAACCCC AAGACCGACA TCTGGTTCGG CGGCACCGGA
GACCCGCACC TGCAGGCGGC CGAGCAGGGC CTGACGCTCG AATACAAGTC GCCCACGCTC
GCGCATCTGC ACCCCTGGGC CCAGCAGCAG GCCAGGCAGT CGGGCTACAG GACCGTGGGC
ATCTACTCCG GCCCGCTGGG CTTCGGCTAC AACCCCGAGC TGCTCGCCAA GAAGAAGCTG
CCGGTGCCCA AGACCTGGGC CGACCTGCTC AAGCCCGAAT ACAAGGGCGA TATCCAGGTG
GCCAACCCCG CATCGAGCGG CACGGCCTAC ACCATGATCG CCACGCTGGT GCAGCTGATG
GGCGAGGACA AGGCCTTCGA CTACCTGAAG GCGCTGCACC GGAACGTGGG CCAGTACACC
CGCTCGGGCA CGGGCCCGAT CAAGGCGGTG GCGCGCGGCG AGACGGCCGT GTCGATCAGC
TTCGTGCACG ACGGCCCGGG CGAGAAGATG CAGGGCTTCC CGGTCGAGAC CATCACGCCC
AGCGACGGCA CCGGCGCCGA GATCGGCTCC ATGAGCATCA TCAAGGGCGC CCGCAACCTC
GAGGCCGCGA AGAAGTTCTA TGAATGGGCG CTCACGCCCG GCGCGCAGGA ACTCGGTGCC
GCCAACAAGC AGTTCCAGCT GCCGAGCAAC GCGAATGCCA AGCTCGACCC GCGCATCCCC
GACTTCAAGA AGATCAGGTT CATCAACTAC GACTATGCGA AGTACGGTGC CAGCGCCGAG
CGCCGGCGCC TGATCGCGCG CTGGGAAAAA GACGTCAATT CGCTGCCGCG CTAA
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| Protein sequence | MKKLFTAAAL VGLSAAASAQ GTVNVICSVQ AEWCNVIATV YARTTGTRIN MSLKGSGEAL
AQLIAEKDNP KTDIWFGGTG DPHLQAAEQG LTLEYKSPTL AHLHPWAQQQ ARQSGYRTVG
IYSGPLGFGY NPELLAKKKL PVPKTWADLL KPEYKGDIQV ANPASSGTAY TMIATLVQLM
GEDKAFDYLK ALHRNVGQYT RSGTGPIKAV ARGETAVSIS FVHDGPGEKM QGFPVETITP
SDGTGAEIGS MSIIKGARNL EAAKKFYEWA LTPGAQELGA ANKQFQLPSN ANAKLDPRIP
DFKKIRFINY DYAKYGASAE RRRLIARWEK DVNSLPR
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