| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1095 |
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| Symbol | |
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| ID | 7969617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1199980 |
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| End bp | 1200912 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791691 |
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| Product | Extradiol ring-cleavage dioxygenase class III protein subunit B |
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| Protein accession | YP_002943012 |
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| Protein GI | 239814102 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3384] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00721185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATGA AGAAGAACAC AGGCACCGGC GGCAGCCCGG CGATCCCGTC GGCGCTGGGC
CGCCGCGGCT TTCTCATGGG TTCGGCGCTG GCGGCGACCT CGACGCTGGC TACGCTTTGT
TCGCTGTCGC ACGCCGCGGC CGCGGCCGCG TCGCAGCGGA TGCCGGTCAT CTTCATCGGC
CACGGCTCGC CGATGAATGC GCTGGCCGAC AACGCCTTCA CGCGCCGGCT GGCCGCCTGG
GGCGGGGAGC TGCCGCGGCC CTCGGCCATC CTGAGCGTTT CGGCCCACTG GCTGAGCCGC
GGCGCCACCG GCGTCGGAAT GCAGGAGCGG CCGAAGACGA TCCACGACTT CGGCGGCTTT
CCGCAGGCGC TGTTCGACAT CGAGTACCCG GCGCCGGGCC ATCCCGCGCT CGCGCGCGAG
GCCATCGGCA CGGTGAAGCA GGCCGCGGTG GTCGGCACCC AGCAGTGGGG CCTGGACCAT
GGAACATGGA CGGTGCTGAA GCACCTCTAT CCGAAGGCCG ACATCCCGGT CTTCCAGCTC
AGCATCGACT ACGACCAGCC GGCCGCCTTC CACTACGCGG TCGGCCGCGA CCTGGCGGTG
TTGCGGAGCA TGGGCGTGCT CGTGATGGGA AGCGGCAACC TGGTGCACAA CCTGCGGGCC
ACCGACCGCG GCACGCCCGA CGGGCCCGTG GCCAGCCGGC CCTGGGCGCA ATCGTTCGAC
GACGCGGTGA AGGCCGCGCT CGCGGGGCGG GACGACCGCG CGCTGGTCGG CTATGAAAGG
CTGGCGGGCG CCTCGACCGC GGTGGCCACG CCGGACCACT ACTTTCCGTT TCTCTACGCG
CTCGGCGCCG CGGGAACGGG CGAGCGCGCG AAAACGGTCT ACGAGGGATT CCAGTCGGGC
ACGCTGAGCA TGCGCTGCAT CCAGTTCGGC TGA
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| Protein sequence | MTMKKNTGTG GSPAIPSALG RRGFLMGSAL AATSTLATLC SLSHAAAAAA SQRMPVIFIG
HGSPMNALAD NAFTRRLAAW GGELPRPSAI LSVSAHWLSR GATGVGMQER PKTIHDFGGF
PQALFDIEYP APGHPALARE AIGTVKQAAV VGTQQWGLDH GTWTVLKHLY PKADIPVFQL
SIDYDQPAAF HYAVGRDLAV LRSMGVLVMG SGNLVHNLRA TDRGTPDGPV ASRPWAQSFD
DAVKAALAGR DDRALVGYER LAGASTAVAT PDHYFPFLYA LGAAGTGERA KTVYEGFQSG
TLSMRCIQFG
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