Gene Vapar_1094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1094 
Symbol 
ID7969616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1198925 
End bp1199923 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content70% 
IMG OID644791690 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_002943011 
Protein GI239814101 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.00802536 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCCG CACCGCTGGT GGTGGCGCAC GACCTCGCGC GCACCTTCGA CGTTTCGCCG 
CCATGGCTCA ACCGCGTGCT CGAACGCAAG CCGCGCGTGC TGCTGCATGC GGTGGACGGC 
GTGAGCTTTT CGATCGAGCG TGGCAAGACG CTGGCGCTGG TGGGCGAATC GGGCTGCGGC 
AAGAGCACCG TGGCGCGCCT CTTGGTCGGC CTGTACGCCC CCACGCGCGG CGGCCTGCAG 
TTCGACGGGC AGGACGCGCA TGCCGCGTTC AAGACCCCCG AAGGCCGCAA GCTGCGCCGG 
CGCATCCAGA TGATCTTCCA GGACCCGTAC GCGAGCCTGA ACCCGCGCTG GATCGTCGAA 
GACATCGTCG GCGAGCCGCT GCGCGAGCAC GGCATCCTCC GCGGCAAGGC CGAGCTGCGC 
GAGCGCGTGG GCGAGCTGCT CAAGTCGGTC GGCCTCTCGC CGCTGGACAT GAGCAAGTAC 
CCGCATCAGT TCTCGGGCGG CCAGCGCCAG CGCATCTCCA TTGCACGCGC GCTCGCCACC 
GAGCCCGAGT TCCTGGTGTG CGACGAGCCC ACCTCGGCGC TCGACGTCAG CGTGCAGGCG 
CAGGTGCTCA ACATCATGAA GGACCTGCAG CGCCAGCAGG GCCTGACCTA CCTCTTCATC 
TCGCACAACC TGGCGGTGGT GCGGCACGTG GCCGACCAGG TCGGCGTGAT GTACCTGGGC 
CGGCTGGTCG AGGTGGCGGA CAAGCAGAAG CTCTTCGCCG AGCCGCAGCA TCCCTACACG 
CGCATGCTGC TCGACGCGAT TCCGCAGATG AAGCACACCG GCCGCGCGCG CACGCCGGTG 
CAGGGCGAGG TGCCGAACCC GCTGAACCCG CCGACCGGCT GCGCGTTCCA TCCGCGCTGC 
CCGCATGCGA ATGCGCGCTG CTCGGCCGAG CGGCCGAAGC TGCTGAACAT CCGGGGCGTG 
CAGGTGGCCT GCCACGCGGC CGAAGAAGGC CGCATCTAG
 
Protein sequence
MSAAPLVVAH DLARTFDVSP PWLNRVLERK PRVLLHAVDG VSFSIERGKT LALVGESGCG 
KSTVARLLVG LYAPTRGGLQ FDGQDAHAAF KTPEGRKLRR RIQMIFQDPY ASLNPRWIVE 
DIVGEPLREH GILRGKAELR ERVGELLKSV GLSPLDMSKY PHQFSGGQRQ RISIARALAT 
EPEFLVCDEP TSALDVSVQA QVLNIMKDLQ RQQGLTYLFI SHNLAVVRHV ADQVGVMYLG 
RLVEVADKQK LFAEPQHPYT RMLLDAIPQM KHTGRARTPV QGEVPNPLNP PTGCAFHPRC 
PHANARCSAE RPKLLNIRGV QVACHAAEEG RI