| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1088 |
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| Symbol | |
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| ID | 7969610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1191519 |
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| End bp | 1192763 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644791684 |
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| Product | porin |
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| Protein accession | YP_002943005 |
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| Protein GI | 239814095 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.56864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT CTCTAGTTGC TCTGGCTGCC CTGGCTGTTG CCGGTGTTGC CTCGGCTCAG
TCGTCCGTCA CGCTGTTCGG CGTGGTCGAC GCGTCGATCA GCGGCTATTC GAGCACCTCG
CGTGACCTGA ACGGTGCCAC GTTCCTGAAC CCGTTCTACC TGAACCAAGG CAGCGTCAAG
GTCAGCCGTC GTACACTGGC TAACTCGGGC TACAACTCCA GCCGTATCGG CTTCCGTGGT
ACGGAAGACC TCGGTGGTGG CCTGGCAGCC AGCTTCTGGC TCGAAGCCCC GATCTCCAAC
GACGACGGCC AGCAAGGTAT TGCTACCTTC GCTCGTCGCT CGACCGTGAG CCTGTCGGGT
GGTTTCGGTG AAGTCCGCCT CGGCCGTGAC TACACCCCGA CCTTCTGGAA CGACACCGTG
TTCGATCCGT TCGGCACCAA CGGCGTTGGC TCCAACCTGA TCAACACCGC TAACGACGCC
TTCGGCACCT TCGGCACCCC CGCAGCTGCA ACGGCTCCGT TCACCAACGT TGGCAGCAGC
AACTACGTTC GCGCCAGCAA CAGCATCGGC TACTTCCTGC CGCCGAACCT GGGTGGTTTC
TACGGCCAAG TGCAGTACGC TTTCAGCGAG AAGAACAAGT ACAGCCCGGG CACCGCTACG
CCGGCTACGC TGAACGCTTC GCGCCAAGGC CGTTACGTTG GTGGCCGCTT CGGCTACGCC
AACGGTCCTC TGGACGTTGC GATTGCTTAC GGCAGCAGCA CCGTGGGCGA CAACTACTAT
GTTGGCACGA CCACCAAGGT CAACACGCTG AACCTCGGCG CTTCGTATGA CTTCGGTCCC
GTGAAGCTCT TCGGTGAACT GTCGAAGGCC AAGAACAAGA TCGACTACGA AGTCGAACCG
TTCCTCGGCG GCCGTCCTGA CGTCGACCTC ACCGGCTACC TGCTCGGCGT GACCGTGCCG
GTCGGTGCTG GCCTGATCCG CGCTTCGTAC TCGCACGTCA AGTATGACTT CAACGCTCCT
GCAGTGTTGT TCGCTCCTGC CGTCGAAGAT CCGAAGGCCA ACAAGCTGGC TCTGGGCTAC
GTGCACAACC TGTCGAAGCG CACGGCTCTG TACGCAACGA TCGCTCGCGT GAGCAACAAG
AACGGTGCAG CCCTGACCGT CGGCGGCCCG GCTTTCATCG CCAACGGCGT CTTCACCCCG
AAGACCTCGA CCGGCTACGA CTTCGGTATC CGTCACGCTT TCTAA
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| Protein sequence | MKKSLVALAA LAVAGVASAQ SSVTLFGVVD ASISGYSSTS RDLNGATFLN PFYLNQGSVK
VSRRTLANSG YNSSRIGFRG TEDLGGGLAA SFWLEAPISN DDGQQGIATF ARRSTVSLSG
GFGEVRLGRD YTPTFWNDTV FDPFGTNGVG SNLINTANDA FGTFGTPAAA TAPFTNVGSS
NYVRASNSIG YFLPPNLGGF YGQVQYAFSE KNKYSPGTAT PATLNASRQG RYVGGRFGYA
NGPLDVAIAY GSSTVGDNYY VGTTTKVNTL NLGASYDFGP VKLFGELSKA KNKIDYEVEP
FLGGRPDVDL TGYLLGVTVP VGAGLIRASY SHVKYDFNAP AVLFAPAVED PKANKLALGY
VHNLSKRTAL YATIARVSNK NGAALTVGGP AFIANGVFTP KTSTGYDFGI RHAF
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