| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1083 |
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| Symbol | |
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| ID | 7969605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1185790 |
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| End bp | 1187379 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791679 |
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| Product | threonine dehydratase |
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| Protein accession | YP_002943000 |
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| Protein GI | 239814090 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.715043 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGCGACG TACCTGTGCC GGCACTGACG CCCGCCGACT ATCTCAGAAA AATTTTGAAC
GCCCGCGTTT ACGACGTGGC GGTCGAATCC GCGCTCGAGA AAGCCAATGC ACTCAGCGAG
CGGCTCGGCA ATACCGTGCT GCTCAAGCGC GAAGACCAGC AGCCGGTGTT CAGCTTCAAG
CTGCGCGGCG CCTACAACAA GATGGCGCAC CTCTCGGCGG AGCAGCTCGC GAGTGGCGTC
ATCTGCGCAT CGGCCGGCAA TCACGCGCAG GGCGTGGCGC TGGGCGCGCG CAAGCTGGGC
GCGCGCGCGG TGGTGGTCAT GCCGGTGACC ACGCCGCGGC TCAAGATCGA TGCGGTGCGC
GGCTTCGGCG GCGAGGTGGT GCTGCATGGC GACAGCTATT CCGATGCCTA CCTGCATGCG
CTCGAGCTGC AGGCGCAGCA GGGCCTGACC TTCGTGCACC CCTTCGACGA TCCCGACGTG
ATCGCGGGCC AGGGCACCAT CGCCATGGAA ATCCTGCGCC AGCACCAGGG CCGGCTCGAT
GCGGTGTTCG TGGCGATCGG CGGCGGCGGG CTCATCTCGG GCGTGGCCAA CTACATCAAG
GCGGTGCGCC CGGAGATCAA GGTGATCGGC GTTCAGATGA ACGACTCGGA CGCGATGATG
CAGTCGGTGG CGGCGCGCCA GCGCGTGAGC CTGCCCGACG TGGGACTGTT TTCGGACGGC
ACGGCCGTCA AGCTGGTGGG CGAGGAGACA TTCCGCATCG CCAGCAACCT GGTCGACGAA
TACATCGCGG TCGACACCGA TGCGGTCTGC GCGGCCATCA AGGACGTGTT CGTCGATACC
CGCAGCATCG TGGAGCCGGC GGGCGCGCTG GCGGTGGCCG CCATCAAGCA GTACGTGGCC
GGGCACGGCC GCCACGGCGA AACCTACGCG GCCATCCTGT GCGGCGCCAA CATGAACTTC
GACCGGCTGC GCTTCGTGGC CGAGCGCGCC GAAGTCGGCG AGGAGCGCGA GGCGCTGTTC
GCGGTGACCA TTCCCGAAGA GCGCGGCAGC TTCCGCCGCT TCTGCGAGCT GGTGGGCGAG
ATGCCGGCCA GCGAGTCGCA GGAAACGGGC TCGGCCGGCG GCGCGCTGCG CAACGTGACG
GAGTTCAACT ACCGCATCAG CGACGCGGCC AAGGCGCATG TGTTCGTGGG CCTGACCACC
TCGACGCGCG GCGAATCGAC GACCATCGCG CAGACCTTCA TTGCGCACGG CTTCGACGCG
CTCGATCTCA CGCACGACGA GCTCGCCAAG GAGCATCTGC GGCACCTGGT GGGCGGGCGC
ACGGGTCTCG CGCATGACGA GCGGCTGCTG CGCTTCGTGT TTCCGGAGCG CCCGGGCGCG
CTGCTCAAGT TCCTGAGCCT GATGCGGCCG AACTGGAACA TCAGCCTCTT CCACTACCGC
AACCAGGGCG CCGACTACGG CCGCATCCTG GTGGGCTTGC AGGTGCCGGC CGGCGACGCG
GCGGCCTTCG ACGACTTCCT CGAAACGCTG GGCTATCCCT ACGTCGAGGA AACGGCGAAT
CCGGCCTACA GGCTGTTCCT GCAGGCCTGA
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| Protein sequence | MRDVPVPALT PADYLRKILN ARVYDVAVES ALEKANALSE RLGNTVLLKR EDQQPVFSFK
LRGAYNKMAH LSAEQLASGV ICASAGNHAQ GVALGARKLG ARAVVVMPVT TPRLKIDAVR
GFGGEVVLHG DSYSDAYLHA LELQAQQGLT FVHPFDDPDV IAGQGTIAME ILRQHQGRLD
AVFVAIGGGG LISGVANYIK AVRPEIKVIG VQMNDSDAMM QSVAARQRVS LPDVGLFSDG
TAVKLVGEET FRIASNLVDE YIAVDTDAVC AAIKDVFVDT RSIVEPAGAL AVAAIKQYVA
GHGRHGETYA AILCGANMNF DRLRFVAERA EVGEEREALF AVTIPEERGS FRRFCELVGE
MPASESQETG SAGGALRNVT EFNYRISDAA KAHVFVGLTT STRGESTTIA QTFIAHGFDA
LDLTHDELAK EHLRHLVGGR TGLAHDERLL RFVFPERPGA LLKFLSLMRP NWNISLFHYR
NQGADYGRIL VGLQVPAGDA AAFDDFLETL GYPYVEETAN PAYRLFLQA
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