| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1072 |
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| Symbol | |
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| ID | 7969594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1175760 |
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| End bp | 1177151 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791668 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_002942989 |
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| Protein GI | 239814079 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.538099 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCACC CCCTGCCCTA CGCGTTCGCA CGCAGCCAGC AGCTGCTGCT CGAAGAAGCC
GACGACGGCA GCCACACGCT GTGGATGTCG AGCCATCCCT CGCGCAGCGC GGTCGGCGAG
GTCACGCGCA AGTACGGCGT GCAGGCCTTC GAGGTACTGG CCGACGGCCC GCTCGCGCAG
CGCATCAGCG CGGCCTATGC GCAGGGCGAA TCGAGCGCCG CCGCGGTGGT GAGCGAGGTG
CAGAGCGACG CCGACCTCTC GCGCATGATG CAGGAGCTGC CGGCGGTCGA GGACCTGCTG
GAAAGCGCCG GCGACGCGCC CATCATCCGC ATGCTCAACG CGCTGCTCAC GCAGGCCGCG
CGCGACGGCG CGAGCGACAT CCACATCGAG CCCTACGAGC GCACCTCGTC CGTGCGCTTT
CGCATCGACG GCACGCTGCG CGAGGTGGTG CAGCCCAACC GCGCGCTGCA CGCCGCGCTG
ATCTCGCGCC TGAAGATCAT GGCCGACCTC GACATCTCCG AGAAACGGCT GCCGCAGGAC
GGGCGCATCA GCCTTCGCAT CGGCACGCGC GCGGTCGACG TGCGCGTCTC CACGCTGCCC
AGCGCGCACG GCGAGCGCGC GGTGCTGCGC CTCCTGGACA AGAGCGAATC GAAGCTCACG
CTCGAATCGG TCGGCATGCA GGGCGACACG CTCGCGCGCT TCGAGAAGCT CATTGCGCAG
CCGCACGGCA TCATCCTGGT GACCGGCCCC ACGGGCTCGG GCAAGACCAC CACGCTGTAC
GCCGCGCTGG CCCGGCTGGA TGCGAGCCGC AGCAACATCA TGACGGTGGA AGACCCGATC
GAATACGAAC TGCCGGGCGT GGGCCAGACG CAGATCAACG CCAAGATCGA GCTCACCTTC
GCGAAGGCGC TGCGCGCGAT CCTGCGGCAG GATCCGGACG TGATCATGAT CGGCGAGATC
CGCGATTTCG AGACCGCGCA GATCGCCATC CAGGCCTCGC TCACCGGCCA CCTGGTGCTT
GCCACGCTGC ACACCAACGA TTCTGTCAGC GCCGTCACGC GCCTGACCGA CATGGGCGTG
GAGCCGTTCC TGTTGAGCTC ATCGCTCCTG GGCGTGCTCG CGCAGCGGCT GGTGCGCAAG
GTCTGCACGG CCTGCGGCGG CGCCGGCTGC GAGGCGTGCG GGCAGACCGG CTACCAGGGC
CGCACCGGCA TCTTCGAGCT GCTGGTGGCC GACGAGACCG TGCAGGGCCT GATCCACAGC
AAGGCAGCCG AGAGCGAACT GCTCCAGGCC GGCGCGCGCG GCGGCCTGCG CCTGATGCGC
GAAGACGGCG AACGGCTGGT GCAGGCCGGC ATCACCTCGC GCGCCGAACT GCTTCGCGTC
ACGCGCGACT GA
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| Protein sequence | MRHPLPYAFA RSQQLLLEEA DDGSHTLWMS SHPSRSAVGE VTRKYGVQAF EVLADGPLAQ
RISAAYAQGE SSAAAVVSEV QSDADLSRMM QELPAVEDLL ESAGDAPIIR MLNALLTQAA
RDGASDIHIE PYERTSSVRF RIDGTLREVV QPNRALHAAL ISRLKIMADL DISEKRLPQD
GRISLRIGTR AVDVRVSTLP SAHGERAVLR LLDKSESKLT LESVGMQGDT LARFEKLIAQ
PHGIILVTGP TGSGKTTTLY AALARLDASR SNIMTVEDPI EYELPGVGQT QINAKIELTF
AKALRAILRQ DPDVIMIGEI RDFETAQIAI QASLTGHLVL ATLHTNDSVS AVTRLTDMGV
EPFLLSSSLL GVLAQRLVRK VCTACGGAGC EACGQTGYQG RTGIFELLVA DETVQGLIHS
KAAESELLQA GARGGLRLMR EDGERLVQAG ITSRAELLRV TRD
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