| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1064 |
|---|
| Symbol | |
|---|
| ID | 7969586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1166871 |
|---|
| End bp | 1168652 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791660 |
|---|
| Product | ABC transporter domain protein |
|---|
| Protein accession | YP_002942981 |
|---|
| Protein GI | 239814071 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTAT CCGTCACGGC GCGCGCCGCC ACGTTCGCCC AGGTAGTGAA GCGCGTCTTC
ACGCTTGCGG CGCCCTACTT CCGCTCCGAG GAGAAATGGC GCGCCCGCGC GATGCTGCTG
GGCATCGTCG CGCTGAACCT GTTCTACGTG TACGTGGCGG TTCTGGGCAA CCAGTGGTAC
GGGCGCTTCT ATGACGGGCT GCAGAACAAG GACTCGGCGG TCTTCTGGCG CGAGGTGGGC
GTCTTCGGCT GGATCGCCTT CTTCAACATT GCGGTGCAGG TGCTCAAGTT CTATGTGACG
CAGCTGCTGC AGCTGCGCTG GCGCACCTGG ATGACGCGCG ACTACCTGTC GCGCTGGATG
GCCGACCGCA CCTTCTATCA CCTCGAGCTC GCGCGCTATG CCAACAGCGA CGGCCAGGCG
CCCGACAACC CCGACCAGCG GATCCAGGAG GACATGCAGA TGTTCACCGA CTACACGATG
ACGCTGTCGA TGGGCCTCCT GAACGCCGTG GTCACGCTGG TGAGCTTCGT GGGCATTCTC
TGGGGGCTGT CGGGCAGCTT CGCGTTCTCG ATGGGCGGCA GCACCTACCA GATCGCGGGG
GCGATGGTCT GGCTGGCGGT GGCCTATTGC GTGGTGGGCA CGGCCATCAC GCACTTCATC
GGCCGCCCGC TGATCGGCAC CAACTTCCGG CAGCAGCGCT TCGAGGCCGA CTTCCGGCAC
CACCTGGTGC GGGTGCGCGA ATACAGCGAG GCCATTGCGC TGGACAAGGG CGAGAAGGTC
GAGCACGGCC AGCTCGACCT GCGCTTTGGC AGCGTGCTGC GCAACTACCT GGTGCTGATC
AAGCAGCAGA AGAACCTGAT CACCTTCACC TCGTTCTTCG GGCAGGCGGC CGTGATCTTC
CCGTTCCTGG TGGCCGCGCC GCGCTTCTTC AGCGGCGCCA TCCAGCTCGG CCAGCTGATG
CAGATCTCGT CGGCCTTCGG CAAGGTGCAG GATTCGCTCA GCTGGTTCGT CGACAACTAC
GACCGCGTGG CCGTCTGGCG CGCAACCACC GACCGCCTCA CCAGCTTCGA CGATGCGATG
CGCGCACATG CGGCGCGCAG CCAGTCGCTC GAGCGCGACG GCACCGCACC TGCGCTGCAG
ACCGGCGACT TGACGGTGGC GCTGCCCAAC GGCACCTCGC TGCTCGCCGG CGCGGCGCTC
GCGGTCCAGC CGGGCGACAG CGTGCTGCTG CAGGGGCCTT CGGGCAGCGG CAAGTCGACC
CTGTTCCGCA CCTTTGCCGG CATCTGGCCG TTCGCACGCG GCCATGTGAA GGTGCCCGAG
GGCGCGGTGT TCATGCCGCA GCGGCCCTAC GTGCCGGACG GCACCCTGCG CAATGCGCTG
ACCTATCCGA ATCCGGCCGA GAACTACAGC GATGCCGATC TGCGCCAGGC GCTGGCCGAC
GCGCTGCTGC CCAACCTCGT GGACCGGCTC GACGACAGCG ATGCCTGGAG CCAGAAGCTT
TCGGGTGGCG AGCAGCAGCG GCTGTCGATT GCGCGCGTGC TGCTGAAGAA GCCGTCATGG
CTCTTTGCCG ACGAGATCAC CAGCGCGCTC GACGCCGAGG CCGAGGGCGT GCTCTACAAG
CGGCTCTCCG ACCGGGTGAA GGCCGCGGGC GGCGCCATGG TGTCGATCGC GCACCGCGCG
GCGGTCGGCG ACTTCCACAA CCAGCGATGG ACGCTGGTGC CCCAGCCCGA AGGCGCACCC
GCGGGCGGCG CGCGCTACCG GCTGGAGACT GCGGCCACCT AG
|
|---|
| Protein sequence | MSLSVTARAA TFAQVVKRVF TLAAPYFRSE EKWRARAMLL GIVALNLFYV YVAVLGNQWY
GRFYDGLQNK DSAVFWREVG VFGWIAFFNI AVQVLKFYVT QLLQLRWRTW MTRDYLSRWM
ADRTFYHLEL ARYANSDGQA PDNPDQRIQE DMQMFTDYTM TLSMGLLNAV VTLVSFVGIL
WGLSGSFAFS MGGSTYQIAG AMVWLAVAYC VVGTAITHFI GRPLIGTNFR QQRFEADFRH
HLVRVREYSE AIALDKGEKV EHGQLDLRFG SVLRNYLVLI KQQKNLITFT SFFGQAAVIF
PFLVAAPRFF SGAIQLGQLM QISSAFGKVQ DSLSWFVDNY DRVAVWRATT DRLTSFDDAM
RAHAARSQSL ERDGTAPALQ TGDLTVALPN GTSLLAGAAL AVQPGDSVLL QGPSGSGKST
LFRTFAGIWP FARGHVKVPE GAVFMPQRPY VPDGTLRNAL TYPNPAENYS DADLRQALAD
ALLPNLVDRL DDSDAWSQKL SGGEQQRLSI ARVLLKKPSW LFADEITSAL DAEAEGVLYK
RLSDRVKAAG GAMVSIAHRA AVGDFHNQRW TLVPQPEGAP AGGARYRLET AAT
|
|---|
| |