| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1048 |
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| Symbol | |
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| ID | 7972019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1147238 |
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| End bp | 1148758 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791644 |
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| Product | ABC transporter related |
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| Protein accession | YP_002942965 |
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| Protein GI | 239814055 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGA GCAGCACCAG CCCCGTGCTC GAACTGCGGG GCATCCACAA GCAGTTCGGC
GGCATCCCGG TGCTGCGCGA CGTGCAGCTG AAGCTCTACC CCGGCGAGAT CCATGCGCTC
ATGGGGCAGA ACGGCGCGGG CAAGTCGACG CTCATCAAGG TGCTCACGGG GGTTCTTCCG
TCGAGCGGTG GCGAGATGCA CCTGGGCGGA CAACCCATTC ATCCCGCCTC GCCGCTGGAG
GCGCAGAAGC TCGGCATCAG CACGGTCTAC CAGGAGGTCA ACCTGTGCCC GAACCTTTCG
GTGGCCGAGA ACGTGTTTGC GGGCCGCTAT CCGCGCTGCG GCGCGGCGCA GGGTTTTCGC
ATCGACTGGG CGGCGGTGAA CCGGCGCGCC GAGGAACTGC TGGCGCGCAT CGGCCTGGAC
ATCGACGTGA GCCGGCTGCT GTCGAGCTAT TCGGTCGCGG TGCAGCAGAT GGTGGCCATT
GCGCGCTCGC TGGGCGTGTC GTCGAAGGTG CTGATCCTCG ACGAGCCGAC CTCGAGCCTG
GACGACGACG AGGTCGAGAA GCTGTTCGAG GTGCTGCGGC GCCTGCGAAG CGAGGGGCTC
GCGATCGTCT TCGTGACGCA CTTCTTCAAC CAGATGTATG CGGTGTCGGA CCGCATCACG
GTGCTGCGCA ACGGCAACTG GGTGGGCGAG TGGCGCGCCG CGGACCTTGG CCCGCAGGCA
TTGATTGCGG CGATGCTGGG ACGCGAGCTG GCGGCGCAGT CGGCCCGGCC GGCGGCGCTG
CCGGCCTTCG ATGAAGCGGC GCCCGCCCTG CTGCAGGCCG AGGGCCTGGG CCAGGCAGGG
CAGCTGCAGG CCACCGACCT GCGCGTGCGT GCCGGCGAGG TGGTCGGCAT CGCGGGCCTG
CTGGGCGCGG GCCGCACCGA GCTGGCGCGC CTCCTGTTCG GGCTCGAAGC GCCCGACCGC
GGGGTGCTGA GCATCGATGG CCGCTCCGTC AGCTTCTCGA ACCCGGCGGA CGCCATCCGC
GAAGGACTCG CGCTGTGCCC CGAAGAGCGC AAGACCGACG GCATTGTGGC CGAGCTGTCG
GTGCGCGAGA ACATCGCGCT TGCGCTGCAG GCGCGCCTGG GCGTGCGGCG CTTCCTGTCG
CGCGCCGAGC AGACGGCGAT CGCCGAGCGC TTTGTGGCGT CGCTGGGCAT CAAGACCGCG
AGCGTGGAAA CCCCCATCGG CCTGCTCTCG GGCGGCAACC AGCAAAAAGC CATGATCGCG
CGCTGGCTCG CGACCGAGCC GCGCCTGTTG ATCCTCGACG AGCCCACGCG CGGCATCGAC
GTGGCGGCCA AGCAGGAGAT CATGGAAGAG ATCCTGCGGC TCGCGAAGGC GGGCATGGCG
GTGATCTTCA TCTCGTCGGA GATGAGCGAG GTGGTGCGCG TCGCGCATCG CATCGTGGTG
TTGCGCGACC GGCAGAAGGT GGGCGAACTC CCAGGTGGTT CGACCGAGGA CGAGGTCTAC
GAAATGATTG CAGCAGCATG A
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| Protein sequence | MSQSSTSPVL ELRGIHKQFG GIPVLRDVQL KLYPGEIHAL MGQNGAGKST LIKVLTGVLP
SSGGEMHLGG QPIHPASPLE AQKLGISTVY QEVNLCPNLS VAENVFAGRY PRCGAAQGFR
IDWAAVNRRA EELLARIGLD IDVSRLLSSY SVAVQQMVAI ARSLGVSSKV LILDEPTSSL
DDDEVEKLFE VLRRLRSEGL AIVFVTHFFN QMYAVSDRIT VLRNGNWVGE WRAADLGPQA
LIAAMLGREL AAQSARPAAL PAFDEAAPAL LQAEGLGQAG QLQATDLRVR AGEVVGIAGL
LGAGRTELAR LLFGLEAPDR GVLSIDGRSV SFSNPADAIR EGLALCPEER KTDGIVAELS
VRENIALALQ ARLGVRRFLS RAEQTAIAER FVASLGIKTA SVETPIGLLS GGNQQKAMIA
RWLATEPRLL ILDEPTRGID VAAKQEIMEE ILRLAKAGMA VIFISSEMSE VVRVAHRIVV
LRDRQKVGEL PGGSTEDEVY EMIAAA
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