| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1044 |
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| Symbol | |
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| ID | 7972015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1142286 |
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| End bp | 1143251 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644791640 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_002942961 |
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| Protein GI | 239814051 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.74741 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCA ATCGCCGCAC CCTCAATATC GCACTCGCCG CCGCCTCGCT CGGCGGGCTC
CTGCCCGCCA CCGCGCTGGC GCAGAAGAAG ATCGTGCTCG GCTTCAGCCA GGTGGGCGCC
GAGAGCGAAT GGCGCACCGC CAACACCGAG TCGATCAAGG CCTCGGCCAA GGAAGCCGGC
ATCGAGCTCA AGTTCTCCGA CGCGCAGCAG AAGCAGGAAA ACCAGATCAA GGCGATCCGC
TCGTTCATCG CGCAGAAGGT GGACGTGATC GCCTTCTCGC CGGTGGTCGA ATCGGGCTGG
GAGACCGTGC TGCGCGAAGC CAAGGCCGCC AAGATCCCGG TGGTGCTGAC CGACCGCTCG
GTGAACACCA AGGACGACTC GCTCTACGTG ACCTTCATGG GCTCCGACTT CGTCGAGGAA
GGCCGCAAGG CGGGCCGCTG GCTGGTCGAG AAGATGAAGG ACCAGAAGGG CGAGGTGAAC
ATCGTCGAGC TGCAGGGCAC CGTGGGCTCG GCTCCGGCTA TCGACCGCAA GAAGGGCTTC
GAGGAAATCA TCAAGGCCGA CCCCAAGTTC AAGATCCTGC GCTCGCAGAC CGGCGACTTC
ACGCGCGCCA AGGGCAAGGA AGTGATGGAA GCCTTCCTGA AGGCCGAGGG CAAGAAGATC
AACGTGCTCT ACGCGCACAA CGACGACATG GCCATCGGCG CCATCCAGGC CATCGAGGAA
GCGGGCCTGA AGCCGGCCAA GGACATCACG ATCATCTCGA TCGATGCCGT CAAGGGCGCC
TTCGAAGCCA TGATCGCCGG CAAGCTCAAC GTGTCGGTCG AATGCAGCCC GCTGCTCGGC
CCCCAGCTGA TGAGCGCCGT GAAGGACATC AAGGCCGGCA AGCAGCTGCC CAAGCGCATC
GTGACCGAAG AGACGATCTT CCCGATGGAA GTCGCCGCCA AGGAATTCCC CAATCGAAAA
TATTGA
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| Protein sequence | MKLNRRTLNI ALAAASLGGL LPATALAQKK IVLGFSQVGA ESEWRTANTE SIKASAKEAG
IELKFSDAQQ KQENQIKAIR SFIAQKVDVI AFSPVVESGW ETVLREAKAA KIPVVLTDRS
VNTKDDSLYV TFMGSDFVEE GRKAGRWLVE KMKDQKGEVN IVELQGTVGS APAIDRKKGF
EEIIKADPKF KILRSQTGDF TRAKGKEVME AFLKAEGKKI NVLYAHNDDM AIGAIQAIEE
AGLKPAKDIT IISIDAVKGA FEAMIAGKLN VSVECSPLLG PQLMSAVKDI KAGKQLPKRI
VTEETIFPME VAAKEFPNRK Y
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