| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1040 |
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| Symbol | |
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| ID | 7972011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1137804 |
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| End bp | 1138742 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791636 |
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| Product | SMP-30/Gluconolaconase/LRE domain protein |
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| Protein accession | YP_002942957 |
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| Protein GI | 239814047 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3386] Gluconolactonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.367735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGA CCGGCCGCAC CGCATCCACT CCCACGCCCC TTGGCGTGCC ATCGATCCTC
GGCCAGCCCG AGTGCCTGTG GCCCGCGGGC GCCACGCTCG GCGAGGGCAC GCTGTGGTCG
CCGCGCGAAC GGGCGCTCTA CTGGATCGAC ATCCTCGAAA GCCGCCTGTA CCGGCTCGAC
CCGGCCAGCG GCGCGCGGCG CAGCTGGCAG TTCGACGAGG AGATCACCGC GCTGGCCGAG
CGCGCCAACG CGCCGGGGCT GATCGTCACC ATGCGCCGCG GCTTCGCCTT GTTCGATCCC
GCGGTGGATG CGGCGCCGCG CTACCTGCAC CAGCCCGAGC CCGACCGGCC CGGCAACCGC
TTCAACGACG GCAAGTGCGA CCGCCAGGGC CGCTTCTGGG GCGGCACCAT GGACTTCGAC
TGCGTGGCAC CGACCGGCGC GCTCTACCGC TTCGACGCCG ACGGCCGCTG CACGCGCCAC
GACGACGGCT TTGCCGTGAC CAACGGGCCG ACCTGGTCGC TCGACGAACG CACGATGTAC
TTCAATGCCA CGGTGGAAGG CTGCGTCTAT GCCTACGACT TCGACAGCGC AGCCGGCACG
GTGGGCAACA AGCGGGTGTG GCTTCGCTTT GCCGAGGGCG ATGGCCTGCC CGACGGCATG
ACGACCGACG CGGCCGGCCG CCTCTGGATC GCGCGCTGGG GCGGCCACTG CGTGAGCTGC
CACGACCCGC TGAGCGGCGC CGAGCTGTGC CGCATCGAAC TGCCCGCAAG CAACGTCACG
GACTGCGCCT TCGGCGGCGA GGACCTGTGC ACGCTCTACA TCAGCACCGC GCGCAGCGGG
CTCACGGCCG AACAGCTCGA GGCCGAGCCG CTGGCCGGCG GGTTGTTCGC GGTGCGCATC
GGCAGCCCCG GCCTGCTTGC GGCCGAGTTC GGGGGCTAG
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| Protein sequence | MTQTGRTAST PTPLGVPSIL GQPECLWPAG ATLGEGTLWS PRERALYWID ILESRLYRLD
PASGARRSWQ FDEEITALAE RANAPGLIVT MRRGFALFDP AVDAAPRYLH QPEPDRPGNR
FNDGKCDRQG RFWGGTMDFD CVAPTGALYR FDADGRCTRH DDGFAVTNGP TWSLDERTMY
FNATVEGCVY AYDFDSAAGT VGNKRVWLRF AEGDGLPDGM TTDAAGRLWI ARWGGHCVSC
HDPLSGAELC RIELPASNVT DCAFGGEDLC TLYISTARSG LTAEQLEAEP LAGGLFAVRI
GSPGLLAAEF GG
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