| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1028 |
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| Symbol | |
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| ID | 7971999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1121944 |
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| End bp | 1122873 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791624 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002942945 |
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| Protein GI | 239814035 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGCG CCATCCTTCC GGCCGATCTC GGCTTCTTTT CCACCCTGGC CAGCGCCGGC
AGCCTGAGCG CCGCCGCGCG GGAGCTGGGC ATCACCACAC CCGCGGTCAG CAAGCACCTG
GCGCTGATGG AATCGCGCGC GGGCGTGCTG CTGGTCAACC GCTCCACGCG CCGCATGAGC
CTCACGCCCG AGGGCGAGCT GTACCTGGAG CATGCGCGCC GCATCCTCGG CGAGATCGAC
GGCATGGAGG AGCTGCTGGG CGTGTCGCGC GCCACGCCGC GCGGCCAGCT GCGCGTGAAC
GCAACGCTGG GCTTCGGGCG CAGCCATGTG GCGCCGCTGA TCTCGCGCTT CGTGCGCAAG
CATCCGGCCG TGGAGGTGCA GCTGCAGCTG TCGGTCAATC CACCGGCGCC GAGCGAAGAC
CTGTTCGATG TCTGCGTGCG CTTTGGCGCG CCGCCGGACA GCCGCGTGGT GGCAAGGCAC
ATCGCATCGA ACCGCCGGCT GCTGTGCGCA TCGCCCGCCT ACCTGGCGGC GCGCGGCATG
CCCAAGGTTC CGAACGACCT GGCCAGGCAT AACTGCATCG GCATTCGCCA GGGCGAGGAA
GCCTACGGCG TCTGGCGCCT GACGAGCGGC CGAGGCCGCC ATGCGCGCAC CGAATCGATC
AAGACGCGCG GCAGCCTCGC GACCAACGAC GGCGAGATCG CCGTGAACTG GGCGCTCGAA
GGCCACGGCA TCCTGATGCG GGCGGAGTGG GACATCAACC GCTACCTGCG CAACGGCCGC
CTGGTGCAGG TGCTGCCGCA GTACTTCACG CCCGATGCCG ACATCTACGC GGTGTATCCG
CAGCGGCACC AGCTGGCCGC GCGCGTGCGG GCCTTTGTCG ATTTCCTGGC GCTTTCATTC
ACGCAGCAGG TGGCGTCCGG CAAGGCATAG
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| Protein sequence | MSSAILPADL GFFSTLASAG SLSAAARELG ITTPAVSKHL ALMESRAGVL LVNRSTRRMS
LTPEGELYLE HARRILGEID GMEELLGVSR ATPRGQLRVN ATLGFGRSHV APLISRFVRK
HPAVEVQLQL SVNPPAPSED LFDVCVRFGA PPDSRVVARH IASNRRLLCA SPAYLAARGM
PKVPNDLARH NCIGIRQGEE AYGVWRLTSG RGRHARTESI KTRGSLATND GEIAVNWALE
GHGILMRAEW DINRYLRNGR LVQVLPQYFT PDADIYAVYP QRHQLAARVR AFVDFLALSF
TQQVASGKA
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