| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0986 |
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| Symbol | |
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| ID | 7971957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1084017 |
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| End bp | 1085939 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791582 |
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| Product | glycoside hydrolase 15-related |
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| Protein accession | YP_002942903 |
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| Protein GI | 239813993 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGC TGCAATTGTC GAAAGCACCC GAGGACCGCG CGGGCCTGTC CATTTCCGGG
GCAGCCGGGC CCGCCGACCA GGCGCCGGTC GACCCGCGCG TTGCGGCTTC CGGTGCGCCG
CGCGGCTTCG GGCCGCCGGC CGAGCCCTCG CTCAACGTGG GCGTGATCGG CAACTGCGCC
TACAGCGCGC TCATCGATGC ACGCGGGCGC GCCGTGTGGT GCTGCCTGCC GCGCTTCGAC
GGCGACCCGG TCTTCAACGC GCTGCTGCAC CCGGGCGAGG AGGCCGGCGC CTGGGCCATC
GAGATCGAGG ACTTCGCCTC GAGCAAGCAG TGGTACGAAC CCAATACCGC GGTGCTGCGC
ACGCAGCTGT TCGACAGCGC CGGCCAGGGC ATCGAGATCA CCGACTTCGC GCCGCGCTTC
TACAGCCGCT CGCGCTACTT CCGGCCGCTG ATGATGGTGC GCCGCGTGCG GCCGATTGCC
GGCGCGCCGC GCATCCGCGT GGCGCTCGAT CCGCGCTTCC AGTGGGGCGC CTCGGGGCCG
CTGGAGGTCA CGCGCGGCAG CAACCACATC CGCTACGTGG GGCCCGACGT GACGCTGCGG
CTCAACACCG ACGCGTCGAT CTCGCACATC CTTTCGCGCC AGCCCTTCGT GATCTCGCGC
GAATACAACT TCATGTTCGG CGTCGACGAA ACCCTGCTCG ACGGCATTGC CGACACCGCG
CGCAGCTTCG AGCAGGAGAC CATCGCCTAC TGGCGCACCT GGAGCAAGCG GCTCGCGATT
CCGTTCGAAT ACCAGGACGC GGTGATCCGC GCGGCCATCA CGCTCAAGCT CTCGCTCTAC
GAGGACACCG GCGCCATCGT CGCCGCCATG ACCACCAGCA TTCCCGAGGC GCCGGGCAGC
CAGCGCAACT GGGACTACCG CTACTGCTGG CTGCGCGATG CCTTCTTCGT GGTGCGCGCG
CTCAATTCGC TGAGCGAGGT GGGCACCATG GAAGACTACC TGCGCTGGCT CGGCAACGTG
GTGATCGGCT CGCACGGCGA GCACATCCAG CCGCTGTACG GCATCGGTCT GGAGCGCGAG
CTGCCCGAGT CGATGGTCGA GAACCTCGCG GGCTACCGCG GCATGGGGCC GGTGCGCGTG
GGCAACCAGG CGCAGGAGCA TTTCCAGCAC GACGTCTACG GCAACATCGT GCTCGGCGCG
GCGCAGGCCT TCCACGACCA CCGGCTGCTC GCGCGCGCGG GCCGGGCCGA GTTTCCGCAC
CTCGAGGCCG TGGGCGAGCA GGCGATCCGC GTCTACGGCA CGCCCGATGC GGGCATGTGG
GAGCTGCGCA CCCGCGCCCG CGTGCACACC AGCTCTGCGC TCATGAGCTG GGCCGCCTGC
GACCGGCTTG CCAAGATCGC GCGCGCGCTG GCGCTGCCCG AACGCGCGGC CTACTGGCAC
GGCCACGCCG CGCGCATGAA AGAAGAGATT CTGGCCAAGT CGTGGTGCGA GGAGCGCCAG
GCCTTTGCCG AAAGCTTCGG CGGCCATGAA CTGGACGCCA GCATCCTGCT GATGGTGGAG
GTGGGGCTGA TCGACGCACG CGACCCGCGC TTCATCTCGA CTGTCGACGC CATGGAAAAG
TCGCTCTGCG ACGGCCCGTA CATGCGCCGC TACGAGGCGG CCGACGACTT CGGCAAGCCC
GAGACCGCCT TCAACATCTG CACCTTCTGG CGCATCGACG CGCTCGCCAA GATCGGCCGC
AAGGCCGAGG CGCGCCAGAT CTTCGAGACC ATGCTGGCGG CGCGCAACCC GCTCGGCCTG
CTGTCGGAAG ACACGCACCC GGTCACAGGC GAGATGTGGG GCAACTTTCC GCAGACCTAC
TCGATGGTGG GCATCATCAA TGCCGCTGTG CGGCTGTCGG CGCCGTGGGA CTCGTGCATA
TGA
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| Protein sequence | MSELQLSKAP EDRAGLSISG AAGPADQAPV DPRVAASGAP RGFGPPAEPS LNVGVIGNCA
YSALIDARGR AVWCCLPRFD GDPVFNALLH PGEEAGAWAI EIEDFASSKQ WYEPNTAVLR
TQLFDSAGQG IEITDFAPRF YSRSRYFRPL MMVRRVRPIA GAPRIRVALD PRFQWGASGP
LEVTRGSNHI RYVGPDVTLR LNTDASISHI LSRQPFVISR EYNFMFGVDE TLLDGIADTA
RSFEQETIAY WRTWSKRLAI PFEYQDAVIR AAITLKLSLY EDTGAIVAAM TTSIPEAPGS
QRNWDYRYCW LRDAFFVVRA LNSLSEVGTM EDYLRWLGNV VIGSHGEHIQ PLYGIGLERE
LPESMVENLA GYRGMGPVRV GNQAQEHFQH DVYGNIVLGA AQAFHDHRLL ARAGRAEFPH
LEAVGEQAIR VYGTPDAGMW ELRTRARVHT SSALMSWAAC DRLAKIARAL ALPERAAYWH
GHAARMKEEI LAKSWCEERQ AFAESFGGHE LDASILLMVE VGLIDARDPR FISTVDAMEK
SLCDGPYMRR YEAADDFGKP ETAFNICTFW RIDALAKIGR KAEARQIFET MLAARNPLGL
LSEDTHPVTG EMWGNFPQTY SMVGIINAAV RLSAPWDSCI
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