| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0968 |
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| Symbol | |
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| ID | 7970143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1065981 |
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| End bp | 1067345 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791564 |
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| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
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| Protein accession | YP_002942885 |
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| Protein GI | 239813975 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAA AAGTATTTAT CAAGACCTTC GGCTGCCAGA TGAACGAGTA CGACTCGGAC
AAGATGGCCG ACGTGCTGCA CGCCGCCCAG GGCTACGAGC CGACGCAGAA CGTGGACGAG
GCCGACCTGA TCCTGTTCAA CACCTGCTCG GTGCGCGAGA AGGCGCAGGA GAAGGTGTTC
AGCGACCTCG GCCGCGTGAA GCACCTGAAG GCCAAGGGCG TGAAGATCGG CGTGGGCGGC
TGCGTGGCGA GCCAGGAGGG CGAGGCCATC ATCGCGCGCG CCCCCTACGT CGACATCGTG
TTCGGCCCGC AGACGCTGCA CCGCCTGCCC GAGATGCTGA ACGACCGCGA GCGGCTGGAC
CGGCCCCAGG TCGACATCAG CTTTCCCGAG ATCGAGAAGT TCGACCACCT GCCGCCCGCG
CGCGTCGACG GCGCCACGGC GTTCGTCTCG ATCATGGAAG GCTGCTCCAA GTACTGCAGC
TACTGCGTGG TGCCTTACAC CCGCGGCGAG GAAGTGAACC GTCCGCTGGA CGACGTGCTG
GTGGAGATCG CCGGCCTGGC CGACCAGGGC GTGCGCGAAG TCACGCTGCT GGGGCAGAAC
GTGAACGCCT ACCGCGGCCG CATGGGAGAC ACGGCCGAGA TCGCCGACTT CGCGCTGCTC
ATCGAATACG TCGCCGAGAT TCCGGGCATC GAGCGCATCC GCTACACCAC CAGCCACCCC
AACGAGTTCA CGCCGCGGCT GATCGAGGCC TATGCCAAGG TGCCGCAGCT GGTGAGCCAC
CTGCACCTGC CGGTGCAGCA CGGCAGCGAC CGCATCCTGA TGGCCATGAA GCGCGGCTAC
ACCGCCATGG AATACAAGAG CACGGTGCGC AAGTTGCGCG CCATCCGGCC CGAACTCGCG
CTCTCCAGCG ACTTCATCGT CGGCTTCCCG GGCGAGACCG ACGAAGACTT CGCCAAGATG
ATGAAGCTGA TCGACGACTG CCAGTTCGAC AACAGCTTCA GCTTCATCTT CAGCCCGCGC
CCCGGCACGC CCGCCGCGGC GCTGCAGGAC GACACGCCCC ATGCGGTGAA GCTGGCTCGC
CTGCAGACGC TGCAGCGCGT GATCGACGGC AACGTGCGCC GCTTCGGCGA TGCGCTGGTC
GGCACCACGC AGTGCGTGCT GGTCGAGGGG GCTTCCCGCA AGGATGCGAA CGAACTGATG
GGCCGCACCG CCTGCAACCG CGTGGTCAAC TTCGAAGGCG ACGCGCGCCT GGTCGGGCAG
ATGGCCGACC TGCGCATCAC GCGCTCGCTG GCCTACACGC TGCGCGGCGA GGTGGCCACG
CGCGAATCGT CGACGGTGCC GGTTCCCGCC GCGCTCGCCG CCTGA
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| Protein sequence | MSKKVFIKTF GCQMNEYDSD KMADVLHAAQ GYEPTQNVDE ADLILFNTCS VREKAQEKVF
SDLGRVKHLK AKGVKIGVGG CVASQEGEAI IARAPYVDIV FGPQTLHRLP EMLNDRERLD
RPQVDISFPE IEKFDHLPPA RVDGATAFVS IMEGCSKYCS YCVVPYTRGE EVNRPLDDVL
VEIAGLADQG VREVTLLGQN VNAYRGRMGD TAEIADFALL IEYVAEIPGI ERIRYTTSHP
NEFTPRLIEA YAKVPQLVSH LHLPVQHGSD RILMAMKRGY TAMEYKSTVR KLRAIRPELA
LSSDFIVGFP GETDEDFAKM MKLIDDCQFD NSFSFIFSPR PGTPAAALQD DTPHAVKLAR
LQTLQRVIDG NVRRFGDALV GTTQCVLVEG ASRKDANELM GRTACNRVVN FEGDARLVGQ
MADLRITRSL AYTLRGEVAT RESSTVPVPA ALAA
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