| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0921 |
|---|
| Symbol | ddl |
|---|
| ID | 7970096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1015122 |
|---|
| End bp | 1016093 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644791517 |
|---|
| Product | D-alanine--D-alanine ligase |
|---|
| Protein accession | YP_002942838 |
|---|
| Protein GI | 239813928 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.26052 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTTC AGGATCCCAA GCAATTCGGC AAGGTGGCCG TGCTGTTCGG CGGAAGCTCT
GCCGAGCGCG AAATCTCGCT CCTGTCCGGC AACGGCGTGC TCGAGGCGCT GCGCTCGCGC
GGCGTCGATG CGCATGCCTT CGATCCCGCC GAGCGCGACC TGGTCGAGCT GCGGCGCGAG
GGCTTCGCGC GCTGCTTCAT CGCGCTGCAT GGCCGGCATG GCGAGGACGG CACGGTGCAG
GGCGCGCTCG AGCTGCTCGG CATTCCCTAC ACCGGCTCGG GCGTGATGGC TTCGAGCGTG
GCCATGGACA AGGTCATGAC CAAGCGCATC TGGCAGGCCG ACGGCCTGCC GACGCCCCGG
TACGTGCGCC TGGCGTTCGA TCAGCAAAGC CGCGAGCAGG TCCGCGCCGT GCCCGACGTG
CTGGGCCTGC CGCTGATCGT GAAGCCGCCG CGCGAGGGCT CGTCGATCGG CGTGACCAAG
GTCGAGGGCT ATTCGCAGAT GCAGGACGCG GTGACGCTGT CGGCCAGGTA CGACGCCGAC
GTGCTGTGCG AGGAATTCAT CGAGGGCGAG GAAGTGACCT GCGCCGTGCT CGGCCAGGGG
CTCGACGCGC GCGCGCTGCC GGTGGTGCGC ATTGCCGCAC CCGAAGGCGC CTACGACTAC
CAGAACAAGT ACTTCACCGA CGACGTGAAG TACCACTGCC CGAGCGGGCT GCCCGAAGCC
GAGGAGCACG AGATCCAGCG CATCACGCTG GCCGCGTACC ACACGCTCGG CTGCCGCGGC
TGGGGCCGCG CCGACGTGAT GATCCGCGCG AGCGACCGCA AGCCCTTCCT GCTCGAGATG
AACACCTCGC CCGGCATGAC CAGCCATTCG CTGGTGCCCA TGTCGGCGCG CGCATCGGGC
ATTGCCTACG AAGACCTGTG CCTGCGCGTG CTGGCCTCGG CTTCGCTGGA TGCCGCAGGG
GGAGCGCAAT AA
|
|---|
| Protein sequence | MSLQDPKQFG KVAVLFGGSS AEREISLLSG NGVLEALRSR GVDAHAFDPA ERDLVELRRE
GFARCFIALH GRHGEDGTVQ GALELLGIPY TGSGVMASSV AMDKVMTKRI WQADGLPTPR
YVRLAFDQQS REQVRAVPDV LGLPLIVKPP REGSSIGVTK VEGYSQMQDA VTLSARYDAD
VLCEEFIEGE EVTCAVLGQG LDARALPVVR IAAPEGAYDY QNKYFTDDVK YHCPSGLPEA
EEHEIQRITL AAYHTLGCRG WGRADVMIRA SDRKPFLLEM NTSPGMTSHS LVPMSARASG
IAYEDLCLRV LASASLDAAG GAQ
|
|---|
| |