Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0908 |
Symbol | |
ID | 7970083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 999391 |
End bp | 999936 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644791504 |
Product | ATP-dependent protease peptidase subunit |
Protein accession | YP_002942825 |
Protein GI | 239813915 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACAGT TTCACGGCAC CACCATCGTG AGCGTGCGCC GCAAGACCCC CCAGGGCGAC CAAGTCGCCA TTGGCGGGGA CGGGCAGGTC ACTCTCGGCA ACATCGTCAT CAAGGGCACC GCGCGCAAGG TGCGGCGGCT CTATCACGGC AAGGTGCTCG CGGGCTTTGC CGGCGCCACG GCCGACGCCT TCACGCTCTT CGAGCGCTTC GAGGCCAAGC TCGAAAAGCA CCAGGGGCAC CTCACGCGCG CGGCCGTCGA ACTCACCAAG GACTGGCGCA CCGACCGCGT GCTGCGCAAG CTCGAGGCCA TGCTGGCTGT GGCCGACGCC ACCACCTCGC TCATCATCAC CGGCAACGGC GACGTGCTGG AGCCCGAAGA CGGCGTGATC GCCATCGGCT CGGGCGGCGC CTATGCGCAG TCGGCCGCCA AGGCGCTGAT CGACAACACC GAACTCACGG CCGAGCAAAT TGTGCGCAAA TCGCTGGCGA TAGCCGGTGA AATCTGCATT TACACGAACA TGAACCACAC GGTGGAAGCG CTCTGA
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Protein sequence | MEQFHGTTIV SVRRKTPQGD QVAIGGDGQV TLGNIVIKGT ARKVRRLYHG KVLAGFAGAT ADAFTLFERF EAKLEKHQGH LTRAAVELTK DWRTDRVLRK LEAMLAVADA TTSLIITGNG DVLEPEDGVI AIGSGGAYAQ SAAKALIDNT ELTAEQIVRK SLAIAGEICI YTNMNHTVEA L
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