Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0899 |
Symbol | dapF |
ID | 7970074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 988979 |
End bp | 989863 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791495 |
Product | diaminopimelate epimerase |
Protein accession | YP_002942816 |
Protein GI | 239813906 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAATCC GCTTTACCAA GATGCAGGGT GCCGGCAACG ATTTCGTCGT GCTGGACGAG ACGCGCGGCA CGCTGGGCCT CACGGCCGCG CAGTACCGCT TCCTGGCCGA CCGCCATTTC GGCGTCGGCG CCGACCAGAT CCTCACGGTG CGGCCGCCCT CCAAGGGCGC GGCCGAGGGG GTCGATTTCC AGTACGTGAT CCACAACGCC GACGGCGGCG AGGTGGAGCA GTGCGGCAAC GGCGCGCGCT GCTTCATGCG CTTCGTGCGC GAGCACCACC TGACCGACAA GGACACGGTG CGCGTCGAAA CGCTGGCCGG CATCATCGAG CCGCGCATGG GCGCAGACGG CCGCGTCACG GTCGACATGG GGCCGCCCAT CTTCGAGCCC GCGCGCGTGC CCTTCGACAC CGCCGGCCTC GATCCGCAGC CCACGGGGTC GTGGCACACC TGGCACCTGG CCCTCGGCAC GCATGCCGAC TCGGCCATCG TGTCGGTCGC GGTGCTGTCG ATGGGCAATC CGCATGCGGT GCAGGTGGTC GACAACGTCG ACACCGCGCC CGTGGCCCGG CAGGGCCCGC TGATCGAGCA CCACCCGCGC TTTGCGCAGC GCGTGAACGC CGGCTTCATG CAGGTGGTCG ACCGCTCGCA CATCAAGCTG CGCGTGTTCG AGCGCGGCGC CGGCGAAACG CTGGCCTGCG GCACCGGCGC CTGCGCGGCG GTGGTGGCGG GCATCCGGCT CGGCCTGCTG GAGCGCCGGG TCGACGTGCA GACGCATGGC GGCGTGCTCA CGATCGGCTG GGAAGGCGAG GGCCATCCGG TGCTCATGAC CGGCCCGGCC ACCACGGTTT TCGAGGGAGA CATCGAGGTG CCCGAGCTGC CATGA
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Protein sequence | MRIRFTKMQG AGNDFVVLDE TRGTLGLTAA QYRFLADRHF GVGADQILTV RPPSKGAAEG VDFQYVIHNA DGGEVEQCGN GARCFMRFVR EHHLTDKDTV RVETLAGIIE PRMGADGRVT VDMGPPIFEP ARVPFDTAGL DPQPTGSWHT WHLALGTHAD SAIVSVAVLS MGNPHAVQVV DNVDTAPVAR QGPLIEHHPR FAQRVNAGFM QVVDRSHIKL RVFERGAGET LACGTGACAA VVAGIRLGLL ERRVDVQTHG GVLTIGWEGE GHPVLMTGPA TTVFEGDIEV PELP
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