| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0874 |
|---|
| Symbol | |
|---|
| ID | 7972090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 961203 |
|---|
| End bp | 962876 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644791472 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_002942793 |
|---|
| Protein GI | 239813883 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCGTC CCACCCAACA ACTCCACCCC GCACGCGAGC CCGCGCCCGT GCGCGCGGCA
GCCACCGTGC TGCTGCTGCG CGATTCAGAG GCCGGCATCG AAGCGCTGAT GACGCGCCGC
TCCGGCACTG CAAGCTTCGC GCCAGGCGCC TATGTGTTCC CCGGCGGGCA GATCGATGCC
GCCGATGAAG CCGCCGCGCG CATCGCCGCA CGGCGGTCCA CCCAGAGCGG CCTGCAGCTC
ACGCAGGCCA TTGCGGCGAT CCGCGAAGGC TTCGAGGAGC TTGGCGTGCT GCTCGCGCAC
CATGCCGACG GCCGGCCCGT GAGCGCGCAG GACATCGCAT CGATGAACCG CAGCACCGCG
TCGCCCGTGT CCTTTGCCGA GCAATGCGCC GCGCGCGGGC TGGTGCTTGC CTGCGACCAG
GTGTTCAGCC TCGCGCACTG GATCACCGAC CGCGACCTGC CCAAGCGCTT CGACGTGCCC
TTCCTGGTGG CGCGCATGCC CGAGGGCCAG GTGCCCACGG CCGACGAGAG CGAGCAATTC
GAGCCCTGCT GGGTGCGGCC GGCCGATGCG CTGGCGCGCC ACACGGCGGG CAGCTTCTTC
ATGATCTTTC CGACCGTGCG CACGCTGCAG CGGCTCGCGG CCTACGCCAA TGTGGACGCG
GTGCTGCAGG CCTGCGCTCC CCAGGGCGGC GCCGAGCAGC CGCTGTGGAC CAGCTGCCCG
CGCGCGGGCC TGCTGCGCGG CCAGGACGCG CGCTACATGG AAAGCGATTC GCCCTACGGC
GAGCTCGCGC TGGTGTGTCC CGACGGGCAG CTGCTGCATG CGCTCGACTG GCAGAGCGAG
CGCGCCGTGC CGCTGCTCAG GAACGTGCAG CGCCTGACCG CGCCCAACCC CGGCGCCATG
ACCGGCCCGG GCACCAACAG CTACATCGTG GGCGATGCGG CCACGGGCTA CCTCGTGATC
GACCCGGGCC CGAACGACGC GGCCCACATC GACCGGCTGT GGCGTGCCAC CGAAGGAAAC
ATCCGCATGA TCGTGTGCAC CCATTCGCAT GCCGACCATT CGCCCGGCGC GGCGCCGCTG
CAGGCGCTGT GCAAGCAGAA GCCGCCGATC CTCGGGCTGT CTTCGGCGCC CACCGCGCGT
TCGTCGGCGC GCTTTGCCGC GGAGCGCGAA CTGCGCGACG GCGAGCGCCT GGTGCTCAGC
GGCACCACGG CCGAAGGCGA ACCTGTCAGC CACACGCTGC GCGCCATCCA CACGCCGGGC
CACGCCGCCA ACCACCTGTG CCTGGTGCTC GAGGAAGACG GACTCCTGTT CTCCGGCGAC
CACATCCTGA ACGGCAGCAC CACGGTGGTC GATCCGCCCG ACGGCGACAT GAACGCGTAC
CTCGATTCGC TCGACAAGCT CGATGCGGCC TGCGAGGCCG GCGGCATCGA TTTCATCCTG
CCCGCGCACG GCCATGTCAT CGGCAGCGCA CGCAGCGCCA TCGCGCAGCT GAAGGCGCAC
CGCCTGAAGC GCGAAGCCAA GATCGCCGCG GCCATGCAAA GGCTGCCCCA GGGCACGCCG
GACGACTGGC TGCCGCTGGC CTACGACGAC GTGCCCGAGC GCATGTGGCC GGTGGCCGCC
CGGTCGCTGG CCGCGCACGT GGCGCGCATC CGGCAACGGA CCTCCGCGCC ATGA
|
|---|
| Protein sequence | MVRPTQQLHP AREPAPVRAA ATVLLLRDSE AGIEALMTRR SGTASFAPGA YVFPGGQIDA
ADEAAARIAA RRSTQSGLQL TQAIAAIREG FEELGVLLAH HADGRPVSAQ DIASMNRSTA
SPVSFAEQCA ARGLVLACDQ VFSLAHWITD RDLPKRFDVP FLVARMPEGQ VPTADESEQF
EPCWVRPADA LARHTAGSFF MIFPTVRTLQ RLAAYANVDA VLQACAPQGG AEQPLWTSCP
RAGLLRGQDA RYMESDSPYG ELALVCPDGQ LLHALDWQSE RAVPLLRNVQ RLTAPNPGAM
TGPGTNSYIV GDAATGYLVI DPGPNDAAHI DRLWRATEGN IRMIVCTHSH ADHSPGAAPL
QALCKQKPPI LGLSSAPTAR SSARFAAERE LRDGERLVLS GTTAEGEPVS HTLRAIHTPG
HAANHLCLVL EEDGLLFSGD HILNGSTTVV DPPDGDMNAY LDSLDKLDAA CEAGGIDFIL
PAHGHVIGSA RSAIAQLKAH RLKREAKIAA AMQRLPQGTP DDWLPLAYDD VPERMWPVAA
RSLAAHVARI RQRTSAP
|
|---|
| |