Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0857 |
Symbol | |
ID | 7972072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 944899 |
End bp | 945726 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791455 |
Product | protein of unknown function DUF88 |
Protein accession | YP_002942776 |
Protein GI | 239813866 |
COG category | [S] Function unknown |
COG ID | [COG1432] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCCCA GCCTTCGCGT GATGCTGCTG ATCGATGCCG ACAACGTCTC GGCCGACGTG ATCGAGCAGG CCGTGCAGCG GACCCTGGCC GAGCACGGCG CGGTTCATGT GCGCCGCGCC TACTGCAACG CCGAAACGGC GCTCAAGCAG CAGGCGCTGT TCAAGCGGCT GTCGGTGCGG CCGATGGTCA ACCTCTCGGC CGGCAAGAAC AGCACCGACA TCGCGCTGGC GGTCGATGCG CTCGACCTCG TGATCGCCGA GCGTCCCGAC GTGGTGGTGC TGGTGTCTTC CGATTCCGAC TTTGCGCCGC TCGTGATCCG CCTGCGCGAA AAGGGCTGCC GCGTCTGCGG CCTGGGCCAG CAGGGCAAGA CCGGCGAGGA GACCGTGGCG GTCTACGACG AGTTCACCGA CCTGCAGCAC CACGGCGCGC CGGTCGCGCC ACGCGCGGCG CCGGCGAAGA AGGCCGCGGC CAAGGTGGCC GCGAAGCGTG CTGCGCCGGC CAAGACGGAA AAGGCCGAGA AGAGTGCGGC CACGCAGCCG GCCCGCAAGG CCGCGGCCAA GGCCCCGGCC CGAAAGACCG CCAAGGCAGC AGCGAAGCCG CCCGCGCCGC AGCCGCCCTC CGAGGCCGCC GAATTCATCC TGCGCGCGGC ACCCGCGCTG CGCAGCGGTG CCGACGTGCC GCTCAACGAC GTGGCCCAGG CGCTGCGCGC GGCTGGCCTC CTCGGCAAGC ACGGCAGTTC GCTCAAGCTG TTCGACAAGC TGCCGGCGGA GTTCGCCGTG CTGCAGCACC CCGACCGCAT CCGCTGGACC GGAGCCGCCG CGCCTTGA
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Protein sequence | MTPSLRVMLL IDADNVSADV IEQAVQRTLA EHGAVHVRRA YCNAETALKQ QALFKRLSVR PMVNLSAGKN STDIALAVDA LDLVIAERPD VVVLVSSDSD FAPLVIRLRE KGCRVCGLGQ QGKTGEETVA VYDEFTDLQH HGAPVAPRAA PAKKAAAKVA AKRAAPAKTE KAEKSAATQP ARKAAAKAPA RKTAKAAAKP PAPQPPSEAA EFILRAAPAL RSGADVPLND VAQALRAAGL LGKHGSSLKL FDKLPAEFAV LQHPDRIRWT GAAAP
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