Gene Vapar_0857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0857 
Symbol 
ID7972072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp944899 
End bp945726 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content71% 
IMG OID644791455 
Productprotein of unknown function DUF88 
Protein accessionYP_002942776 
Protein GI239813866 
COG category[S] Function unknown 
COG ID[COG1432] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCCA GCCTTCGCGT GATGCTGCTG ATCGATGCCG ACAACGTCTC GGCCGACGTG 
ATCGAGCAGG CCGTGCAGCG GACCCTGGCC GAGCACGGCG CGGTTCATGT GCGCCGCGCC
TACTGCAACG CCGAAACGGC GCTCAAGCAG CAGGCGCTGT TCAAGCGGCT GTCGGTGCGG
CCGATGGTCA ACCTCTCGGC CGGCAAGAAC AGCACCGACA TCGCGCTGGC GGTCGATGCG
CTCGACCTCG TGATCGCCGA GCGTCCCGAC GTGGTGGTGC TGGTGTCTTC CGATTCCGAC
TTTGCGCCGC TCGTGATCCG CCTGCGCGAA AAGGGCTGCC GCGTCTGCGG CCTGGGCCAG
CAGGGCAAGA CCGGCGAGGA GACCGTGGCG GTCTACGACG AGTTCACCGA CCTGCAGCAC
CACGGCGCGC CGGTCGCGCC ACGCGCGGCG CCGGCGAAGA AGGCCGCGGC CAAGGTGGCC
GCGAAGCGTG CTGCGCCGGC CAAGACGGAA AAGGCCGAGA AGAGTGCGGC CACGCAGCCG
GCCCGCAAGG CCGCGGCCAA GGCCCCGGCC CGAAAGACCG CCAAGGCAGC AGCGAAGCCG
CCCGCGCCGC AGCCGCCCTC CGAGGCCGCC GAATTCATCC TGCGCGCGGC ACCCGCGCTG
CGCAGCGGTG CCGACGTGCC GCTCAACGAC GTGGCCCAGG CGCTGCGCGC GGCTGGCCTC
CTCGGCAAGC ACGGCAGTTC GCTCAAGCTG TTCGACAAGC TGCCGGCGGA GTTCGCCGTG
CTGCAGCACC CCGACCGCAT CCGCTGGACC GGAGCCGCCG CGCCTTGA
 
Protein sequence
MTPSLRVMLL IDADNVSADV IEQAVQRTLA EHGAVHVRRA YCNAETALKQ QALFKRLSVR 
PMVNLSAGKN STDIALAVDA LDLVIAERPD VVVLVSSDSD FAPLVIRLRE KGCRVCGLGQ
QGKTGEETVA VYDEFTDLQH HGAPVAPRAA PAKKAAAKVA AKRAAPAKTE KAEKSAATQP
ARKAAAKAPA RKTAKAAAKP PAPQPPSEAA EFILRAAPAL RSGADVPLND VAQALRAAGL
LGKHGSSLKL FDKLPAEFAV LQHPDRIRWT GAAAP