| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0839 |
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| Symbol | |
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| ID | 7972054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 924672 |
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| End bp | 925880 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791437 |
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| Product | L-carnitine dehydratase/bile acid-inducible protein F |
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| Protein accession | YP_002942758 |
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| Protein GI | 239813848 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00466449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCATGC TGAATTCCTC GCTGCCGCTG GCCGGCGTGC GCGTCCTCGA TCTGTCCCGC
ATCCTCGCGG GCCCCTGGTG CGGCATGGTG CTGGCCGACA TGGGCGCCGA AGTCATCAAG
GTCGAGCACC CGGGCCGCGG CGACGACACG CGCGACTGGG GCCTGCGTGT CGGCAAGACC
GAGACCGCCT ACTTCAACAG CGTGAACCGC AACAAGCGCT CGGTCACGCT CGACCTGCAG
ACGCCCGAGG GCCAGCAGAT CGCGCGCGAC CTCGCGAAGC AGTGCGACGT GGTGATCCAG
AACTTCAAGT TCGGCGGCAT CGACAAGCTG GGCCTGGGCT ACGAACAGCT CAGCAAGGAG
CATCCGGGGC TCATCTACTG CTCGATCTCG GGCTACGACC GCACCGGCCC CGAAGCCGCG
CGGCCCGGCT ACGACCTCGT GGTGCAGGGC GAGGCCGGGC TGATGGCGCT CAACGGCGAA
GCCAGCCAGC CGCCGCTGAA GTTCGGCGTG GCCATGGTCG ACCTGTTCAC CGGCATGTAC
TCGGCGCAGG CCGTGCTCGC GGCGCTCTAC CAGCGCGAGA AGACCGGCAA GGGCCGGCAT
GTGGAAATGG CTCTCTTCGA CTGCGGCCTG ATGATCACCG CCTACTACGG CCTCGAGGCG
CTGCTGATGG GCGAGGACCC GCCGCGCTAC GGCAACTCGC ATCCGTCGAT CGTGCCCTAC
GGCGTGTTCG ACGCGGCCGA CGGCCCGCTC GTGATCACCG TGGGCAACAA CGCGCAGTTC
GCGCGCTTCT GCACCGAAGT GATCGAGCGG CCCGACCTCG CGGCCGACGA GCGCTTCAAG
ACCAACATCC TGCGCTCGGC GAACCGCGCG GTGCTACTGC CCGAGCTGCA CGCCGAGCTC
GCCAGGCGCC AGCGCGCCGA CCTGCTGGCC AGGCTCAGCG CCTCGGGCAT TCCCTGCGGC
GAAGTGCTGG GCCTGCTCGA AGCGCTCAAC TCCAGGCGCG CGGCCGATGC CGGCCTCGTG
ACCGAGCAGC CGCATCCGGT GGCCGGCAAG GTCAACGTGC TGGCCCCGCC CTACCGCTTC
GACGGCGAGC GCCTGCCCGT GCGCAGCGCG CCGCCGCAAC TGGGCGAAGG CACGCACGAG
GTGCTGCAGT CGCTGCTCGG CCTGTCGGAC GACCGGCTCG CGCAACTGAA AACCAGCGGC
GTCGTCTGA
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| Protein sequence | MPMLNSSLPL AGVRVLDLSR ILAGPWCGMV LADMGAEVIK VEHPGRGDDT RDWGLRVGKT
ETAYFNSVNR NKRSVTLDLQ TPEGQQIARD LAKQCDVVIQ NFKFGGIDKL GLGYEQLSKE
HPGLIYCSIS GYDRTGPEAA RPGYDLVVQG EAGLMALNGE ASQPPLKFGV AMVDLFTGMY
SAQAVLAALY QREKTGKGRH VEMALFDCGL MITAYYGLEA LLMGEDPPRY GNSHPSIVPY
GVFDAADGPL VITVGNNAQF ARFCTEVIER PDLAADERFK TNILRSANRA VLLPELHAEL
ARRQRADLLA RLSASGIPCG EVLGLLEALN SRRAADAGLV TEQPHPVAGK VNVLAPPYRF
DGERLPVRSA PPQLGEGTHE VLQSLLGLSD DRLAQLKTSG VV
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