Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0728 |
Symbol | |
ID | 7974691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 798454 |
End bp | 799818 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644791327 |
Product | General substrate transporter |
Protein accession | YP_002942648 |
Protein GI | 239813738 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCCTG CGCAATCCGC CGCGCAACCA TCGGCTGCGG CCGCCGCCCG CACCGCGCCA GGCACCGCTT CTACCAGCGC TTCCTCCTCC TCGAAATTTG CCACCGTGCT GCGCGTGACG GGCGGCAATT TCATGGAGAT GTTCGACTTC TTCCTGTTCG GCTTCTACGC CACGCAGATC TCGAAGGCCT TCTTCCCGGC GGGCAACGAA TTCGCCTCGC TGATGCTGAC CTTCATGACC TTCGGCGCGG GCTTCCTGAT GCGGCCGCTG GGCGCGATCT TCCTGGGCGC GTACGTCGAC CGCGTGGGCC GCCGCAAGGG CCTGATCGCC ACGCTCGCGC TGATGGCGGT GGGCACGCTG CTCATCGCCT GCGTACCGAG CTACGCCACC ATCGGCTTCG CGGCGCCGCT CCTGGTGCTG GTCGGGCGGC TGCTGCAGGG CTTCTCGGCC GGCGTGGAGC TCGGCGGCGT CTCGGTCTAC CTGTCGGAGA TGGCCACGCC GGGGCGCAAG GGCTTCTACG TGAGCTGGCA GTCGGCCAGC CAGCAGGTGG CGATCATCGT GGCGGCCGCG CTCGGCTACT GGCTCAACGT GACGTTCAGC CCGCAGGAGA TCGGCGACTT CTACTGGCGC ATTCCGTTCT TCGTCGGCTG CCTGATCGTG CCGGTGCTGT TCATCATCCG CCGCTCGCTG CAGGAGACCG AGGAGTTCAT GGCGCGCAAG CACCGGCCCG ACGCGCGCGA GATCTTCCAG TCGATGGTGG CCAACTGGGC CCTCGTCGTG GCCGGGATGA TGCTGGTGTC GATGACCACC GTGTCGTTCT ACCTGATCAC GGTCTACACG CCCACCTTCG GCAAGTCGGT GCTGCACCTG AGCACCACCG ACGCGCTGGT CGTCACGCTG TGCGTGGCCA TCTCCAACTT CATCTGGCTG CCGGTCATGG GCGCGCTGTC CGACCGCGTG GGCCGCAAGC CGCTGCTGAT TCTCTTCACG GTGCTGACCA TCCTCACCGC GTACCCGTCG CTCAAGTGGC TGGTCGGCGC GCCGAGCTTC GGGCGCATGC TCGAAGTGGA GCTGTGGCTG TCGTTTCTCT ACGCGAGCTA CAACGGCGCG ATGGTGGTGG CGCTCACCGA GGTGATGCCG GTCAATGTGC GCACCGCCGG CTTCTCGCTG GCCTACAGCC TCGCGACGGC GCTGTTCGGC GGCTTCACGC CCGCCATTGC CACCGGCCTG ATCGAGATGA CCGGCGACAA GGGAGCGCCG GGCCTGTGGA TGACGGCCGC CGCCGCCTGC GGGCTGGTGG CGACGCTGGT GCTCTATCGG CGCAACGTGG ACCCGGCGGA TTCGGTGCGG GTGCCGGTGG TCTGA
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Protein sequence | MNPAQSAAQP SAAAAARTAP GTASTSASSS SKFATVLRVT GGNFMEMFDF FLFGFYATQI SKAFFPAGNE FASLMLTFMT FGAGFLMRPL GAIFLGAYVD RVGRRKGLIA TLALMAVGTL LIACVPSYAT IGFAAPLLVL VGRLLQGFSA GVELGGVSVY LSEMATPGRK GFYVSWQSAS QQVAIIVAAA LGYWLNVTFS PQEIGDFYWR IPFFVGCLIV PVLFIIRRSL QETEEFMARK HRPDAREIFQ SMVANWALVV AGMMLVSMTT VSFYLITVYT PTFGKSVLHL STTDALVVTL CVAISNFIWL PVMGALSDRV GRKPLLILFT VLTILTAYPS LKWLVGAPSF GRMLEVELWL SFLYASYNGA MVVALTEVMP VNVRTAGFSL AYSLATALFG GFTPAIATGL IEMTGDKGAP GLWMTAAAAC GLVATLVLYR RNVDPADSVR VPVV
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