Gene Vapar_0728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0728 
Symbol 
ID7974691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp798454 
End bp799818 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content67% 
IMG OID644791327 
ProductGeneral substrate transporter 
Protein accessionYP_002942648 
Protein GI239813738 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00883] metabolite-proton symporter 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCCTG CGCAATCCGC CGCGCAACCA TCGGCTGCGG CCGCCGCCCG CACCGCGCCA 
GGCACCGCTT CTACCAGCGC TTCCTCCTCC TCGAAATTTG CCACCGTGCT GCGCGTGACG
GGCGGCAATT TCATGGAGAT GTTCGACTTC TTCCTGTTCG GCTTCTACGC CACGCAGATC
TCGAAGGCCT TCTTCCCGGC GGGCAACGAA TTCGCCTCGC TGATGCTGAC CTTCATGACC
TTCGGCGCGG GCTTCCTGAT GCGGCCGCTG GGCGCGATCT TCCTGGGCGC GTACGTCGAC
CGCGTGGGCC GCCGCAAGGG CCTGATCGCC ACGCTCGCGC TGATGGCGGT GGGCACGCTG
CTCATCGCCT GCGTACCGAG CTACGCCACC ATCGGCTTCG CGGCGCCGCT CCTGGTGCTG
GTCGGGCGGC TGCTGCAGGG CTTCTCGGCC GGCGTGGAGC TCGGCGGCGT CTCGGTCTAC
CTGTCGGAGA TGGCCACGCC GGGGCGCAAG GGCTTCTACG TGAGCTGGCA GTCGGCCAGC
CAGCAGGTGG CGATCATCGT GGCGGCCGCG CTCGGCTACT GGCTCAACGT GACGTTCAGC
CCGCAGGAGA TCGGCGACTT CTACTGGCGC ATTCCGTTCT TCGTCGGCTG CCTGATCGTG
CCGGTGCTGT TCATCATCCG CCGCTCGCTG CAGGAGACCG AGGAGTTCAT GGCGCGCAAG
CACCGGCCCG ACGCGCGCGA GATCTTCCAG TCGATGGTGG CCAACTGGGC CCTCGTCGTG
GCCGGGATGA TGCTGGTGTC GATGACCACC GTGTCGTTCT ACCTGATCAC GGTCTACACG
CCCACCTTCG GCAAGTCGGT GCTGCACCTG AGCACCACCG ACGCGCTGGT CGTCACGCTG
TGCGTGGCCA TCTCCAACTT CATCTGGCTG CCGGTCATGG GCGCGCTGTC CGACCGCGTG
GGCCGCAAGC CGCTGCTGAT TCTCTTCACG GTGCTGACCA TCCTCACCGC GTACCCGTCG
CTCAAGTGGC TGGTCGGCGC GCCGAGCTTC GGGCGCATGC TCGAAGTGGA GCTGTGGCTG
TCGTTTCTCT ACGCGAGCTA CAACGGCGCG ATGGTGGTGG CGCTCACCGA GGTGATGCCG
GTCAATGTGC GCACCGCCGG CTTCTCGCTG GCCTACAGCC TCGCGACGGC GCTGTTCGGC
GGCTTCACGC CCGCCATTGC CACCGGCCTG ATCGAGATGA CCGGCGACAA GGGAGCGCCG
GGCCTGTGGA TGACGGCCGC CGCCGCCTGC GGGCTGGTGG CGACGCTGGT GCTCTATCGG
CGCAACGTGG ACCCGGCGGA TTCGGTGCGG GTGCCGGTGG TCTGA
 
Protein sequence
MNPAQSAAQP SAAAAARTAP GTASTSASSS SKFATVLRVT GGNFMEMFDF FLFGFYATQI 
SKAFFPAGNE FASLMLTFMT FGAGFLMRPL GAIFLGAYVD RVGRRKGLIA TLALMAVGTL
LIACVPSYAT IGFAAPLLVL VGRLLQGFSA GVELGGVSVY LSEMATPGRK GFYVSWQSAS
QQVAIIVAAA LGYWLNVTFS PQEIGDFYWR IPFFVGCLIV PVLFIIRRSL QETEEFMARK
HRPDAREIFQ SMVANWALVV AGMMLVSMTT VSFYLITVYT PTFGKSVLHL STTDALVVTL
CVAISNFIWL PVMGALSDRV GRKPLLILFT VLTILTAYPS LKWLVGAPSF GRMLEVELWL
SFLYASYNGA MVVALTEVMP VNVRTAGFSL AYSLATALFG GFTPAIATGL IEMTGDKGAP
GLWMTAAAAC GLVATLVLYR RNVDPADSVR VPVV