| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0610 |
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| Symbol | |
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| ID | 7973595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 666153 |
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| End bp | 667355 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644791217 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_002942538 |
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| Protein GI | 239813628 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT CCCTGCTCGC GCTGATCACC TTGACTGCTA GCTGCGTTGC ATTGGCTCAG
TCATCCGTCA CGCTTTTCGG CGTGGTCGAT GCGTCAGTCA GTGGCTATTC AAGTCGTTCG
AATGATGAAC GCCCGGTGCT GCTCCATCAA CGCAGCATCA AACTCAGCCG TACGGCGCTC
TCCAATTCCG CCTACAACCC GAGCCGTCTG GGCTTCCGCG GCACGGAAGA CCTCGGCGGG
GGCTTGGCAG CCAGCTTCTG GCTCGAAGCC CCGATCACAA ATGACGATGG TGCCACAGGC
GTTTCGAGCT TCACACGTCG CTCGACGGTA AGCCTATCAG GTGATTTCGG TGAGATCCGT
CTTGGTCGCG ACTACACGCC GACGTTCTGG AGCAACGCCG TATTCGACCC GTTCGGAGCC
AATGGTGTTG GTACCAACTT GATCCACTCG GCCAACAATT TCAATGCCAC TGGCGGCACG
GGTGGCTTCG GTGGCAACCA GAACGTTCTG CGTGCCAGCA ACTCCATCGG CTACTTCCTG
CCGCCGATTC TCGGTGGTTT CTATGGCCAG TTGCAGTATG CGTTCCATGA GCAGACTAAA
TACGATCCTG GCACAGCCAC ACCGGTAAAC GCGCTCGGCG TTGCGGCCCC GACACGCGCT
GGCAGGTATG TCGGCGGCCG CCTTGGGTAT GCCAACAAAG CCTTGGACAT TGCAGTGGCG
TATGGCAACA GCACGAGCGG TGATCAGTTT TATCTTGGCA CCACCGATTC TGTAAAGACC
ATGAACCTTG GGGCGTCCTA CGACTTTGGA CCGGTCAAGC TGTTTGGCGA ACTCTCGCAC
ATCAAGAACT CGCGCGACTA TGCAGTCACC CCAATCGCCC CAACCGGCGA TGCCGATCTG
AGAGGCTATC TGCTCGGTGT GACCGTGCCC ATCGGCGCCG GCTTAGTCCG CGCCTCCTAT
TCGCGCGTCC GCTACGACCG CGACCAGCCT TTCACCCTCG TTGACGACCC GAAGGCAAGC
AAGCTTTCAC TAGGCTATGT GCACAACCTC TCGAAGCGTA CGGCGCTCTA TGCAACGATC
GCGCGCGTGA GCAACAAGAA CGGTGCCGCT CTCACCGTGG GTGGTCCGGC TTTCATCAGC
AACGCTGTTT TCACCCCGGG AACCTCGAGC GGCTACGATT TGGGCATCCG GCACGCATTC
TGA
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| Protein sequence | MKKSLLALIT LTASCVALAQ SSVTLFGVVD ASVSGYSSRS NDERPVLLHQ RSIKLSRTAL
SNSAYNPSRL GFRGTEDLGG GLAASFWLEA PITNDDGATG VSSFTRRSTV SLSGDFGEIR
LGRDYTPTFW SNAVFDPFGA NGVGTNLIHS ANNFNATGGT GGFGGNQNVL RASNSIGYFL
PPILGGFYGQ LQYAFHEQTK YDPGTATPVN ALGVAAPTRA GRYVGGRLGY ANKALDIAVA
YGNSTSGDQF YLGTTDSVKT MNLGASYDFG PVKLFGELSH IKNSRDYAVT PIAPTGDADL
RGYLLGVTVP IGAGLVRASY SRVRYDRDQP FTLVDDPKAS KLSLGYVHNL SKRTALYATI
ARVSNKNGAA LTVGGPAFIS NAVFTPGTSS GYDLGIRHAF
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