| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0588 |
|---|
| Symbol | rpoB |
|---|
| ID | 7973572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 640943 |
|---|
| End bp | 645067 |
|---|
| Gene Length | 4125 bp |
|---|
| Protein Length | 1374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644791195 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_002942517 |
|---|
| Protein GI | 239813607 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.71897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAAT CGTCCGCGTA CAGTTACACC GAACGCAAGC GCATCCGAAA AAGTTTCGGC
AATCGCGACA GCGTCGTAGA AATCCCCTAC CTGCTGCAGA TGCAGAAAGA CGCGTACACC
GCGTTCCTGC AAGCCGGCAT TCCTCCCAAA CAGCGCACCG TCGAAGGCCT GCAGGCCGCG
TTCGACGCTG CCTTCCCGAT CGTCTCGCAC AATGGTTTTG TCGAGATGAA GTTCCTCGAG
TACAACCTCG CGAAGCCGGC TTTCGACGTG CGCGAGTGCC AGACCCGCGG CCTGACCTTC
GCCTCGGCCG TGCGCGCCAA GGTCCAGCTC ATCATCTATG ACCGCGAGTC GTCGACCTCG
CAGTCGAAGG TGGTCAAGGA AGTGAAGGAA CAAGAGGTCT ACATGGGCGA AGTGCCGCTC
ATGACCGACA AGGGTTCGTT CATCATCAAC GGCACCGAGC GCGTGATCGT CTCGCAGCTG
CACCGTTCGC CGGGCGTGTT CTTCGAACAC GACAAGGGCA AGACGCACAG CTCGGGCAAG
CTGCTGTTCT CGGCCCGCGT GATTCCCTAC CGCGGTTCGT GGCTCGACTT CGAGTTCGAC
CCGAAGGACA TGCTGTACTT CCGCGTCGAC CGCCGCCGCA AGATGCCGGT CACGATCCTG
CTGAAGGCCA TCGGCCTGAA CCCGGAATCG ATCCTCGCGA ACTTCTTCGT GAACGACAAC
TTCCGCCTGA TGGACAGCGG CGCGCAGATG GAATTCGTTC CCGAGCGCCT GCGCGGCGAA
GTCGCGCGCT TCGACATCAC CGACAAGTCG GGCAAGGTCG TGGTCGCCAA GGACAAGCGC
GTGACCGCGC GCCACACGCG CGAGCTCGAG CAGTCGGGCA CCACGCACAT CAGCGTGCCG
GAAGACTTCC TGGTCGGCCG CGTCATTGCC CGCAACATCG TCGATGCCGA CTCCGGCGAG
ATCCTGGCCA AGGCCAACGA CGAACTGACC GAAGCACTGC TCAAGAAGCT GCGCACGGCC
GGCGTGCAGG ACATCCAGGT GATCTACACC AACGAACTCG ACCAGGGCGC GTACATCTCG
CAGACCCTGC GCATCGACGA GACGGTGGAC GAATTCGCCG CCCGCGTGGC CATCTACCGC
ATGATGCGCC CCGGCGAGCC GCCGACGGAA GACGCGGTGC AGGCCCTGTT CCAGCGCCTG
TTCTACAACC CGGACACCTA CGACCTGTCG CGCGTGGGCC GCATGAAGTT CAACGCCAAG
GTCGGCCGCG ACGAATCGAC CGGCCCGATG GTGCTGACCA ACGAAGACAT CCTGGCCGTG
GTCAAGATCC TCGTGGACCT GCGCAACGGC AACGGCGAAG TCGACGACAT CGACCACCTG
GGCAACCGCC GCGTGCGTTG CGTGGGCGAA CTGGCCGAGA ACCAGTACCG CACCGGCCTC
GCCCGCATCG AGAAGGCCGT GAAGGAGCGT CTGGGCCAGG CCGAGCAAGA GCCGCTGATG
CCGCACGACC TGATCAACAG CAAGCCGATC TCGGCCGCGC TGAAGGAATT CTTCGGTGCT
TCGCAGCTGT CGCAGTTCAT GGACCAGACG AATCCGCTGT CCGAAATCAC CCACAAGCGC
CGCGTGTCGG CCCTTGGCCC GGGTGGTCTG ACGCGCGAGC GTGCCGGCTT CGAAGTGCGC
GACGTGCACG TCACCCACTA CGGCCGCGTG TGCCCGATCG AAACGCCTGA AGGCCCGAAC
ATCGGCCTGA TCAACTCGCT GGCCCTGTAC GCCCGCCTGA ACGAATACGG CTTCATCGAG
ACGCCGTACC GCCGCGTGGT CGACAGCAAG GTCACCAACG AGATCGACTA CCTGTCGGCC
ATCGAGGAAG GCAAGTACGT CATCGCCCAG GCCAATGCGG TCCTGGACAA GGAAGGCAAG
CTGACCGGCG ACCTGGTCTC CGCGCGTGAA GCCGGCGAAT CGATCCTGGT GGGTGCCGAG
CGCATCCAGT ACATGGACGT GTCGCCCGCG CAGATCGTGT CGGTGGCTGC CTCGCTCGTG
CCCTTCCTCG AGCACGACGA CGCGAACCGC GCGCTGATGG GCGCCAACAT GCAGCGCCAG
GCGGTGCCCG TGCTGCGCCC CGAGAAGCCG ATGGTCGGCA CCGGTATCGA GCGCGTCTCC
GCGGTCGACT CCGGCACCGT GGTCACGGCC ACCCGCGGCG GTATCGTCGA TTACGTCGAC
GCGACCCGCA TCGTGGTGCG CGTGAACGAC GCCGAAGCGG CAGCCGGTGA AGTCGGTGTG
GACATCTACA ACCTGATCAA GTATCAGCGT TCGAACCAGA ACACCAACAT CCACCAGCGC
CCGATCGTCA AGCGCGGCGA CAAGATCGCC AAGGGCGACG TGGTGGCCGA CGGTGCATCG
ACCGACCTCG GCGAACTGGC CCTCGGCCAG AACATGCTGA TCGCGTTCAT GCCCTGGAAC
GGCTACAACT TCGAAGACTC GATCCTGATC TCGGAACGCG TCGTCGCGGA AGACCGCTAC
ACCTCGATCC ACATCGAGGA ACTGGTGGTG ATGGCCCGCG ACACCAAGCT CGGTGCCGAG
GAAATCACGC GCGACATCCC GAACCTGGCC GAGCAGCAGC TCAACCGCCT GGACGAGTCC
GGCATCATCT ACGTGGGTGC CGAAGTGCAG CCGGGCGACA CGCTGGTGGG CAAGGTCACG
CCGAAGGGCG AGACCACGCT GACGCCAGAA GAGAAGCTGC TTCGCGCCAT CTTCGGCGAG
AAGGCTTCCG ACGTGAAGGA CACCTCGCTG CGCGTGGACC AGGGCTCGCA AGGCACCGTG
ATCGACGTGC AGGTGTTCAC CCGCGAAGGC ATCACGCGCG ACAAGCGCGC CCAGCAGATC
ATCGACGACG AGCTCAAGCG CTTCCGCCTC GACCTGAACG ACCAGCTTCG CATCGTCGAA
GCCGACGCGT TCGACCGTAT CGAGAAGCTC CTGACCGGCA AGGTTGCCAA CGGCGGCCCG
AACAAGCTGG CCAAGGGCAC CAAGCTCGAC AAGGCCTACC TGTCGTCGGT CGAGAAGTTC
CACTGGTTCG ACATCCGCCC GGCGGACGAC GAAGTGGCCA CGCAGCTCGA GTCGATCAAG
AACTCGCTGG AGCAGACGCG CCATAGCTTC GACCTCGCGT TCGAGGAAAA GCGCAAGAAG
CTCACGCAGG GCGACGAGCT GCCCGCGGGC GTGCTCAAGA TGGTCAAGGT CTACCTGGCC
GTCAAGCGCC GCCTGCAACC CGGCGACAAG ATGGCCGGCC GCCACGGCAA CAAGGGTGTG
GTGTCGAAGA TCGTTCCGGT CGAAGACATG CCCCACATGG CCGACGGCAC GCCGTGCGAC
ATCTGCCTGA ATCCGCTGGG CGTGCCTTCG CGGATGAACG TGGGCCAGGT GCTCGAAGTG
CACCTGGGCT GGGCCGGCAA GGGCATCGGC CACCGCATCG GCGACCTGCT GCAGCAGGAG
GCCAAGGTGG CCGAGCTGCG CAAGTTCATG GAGCAGCTGT ACAACGGCTC GGGCCGTCCG
GAAGACCTCA GCCAGCTGAG CGACTCCGAC GTGCTCGCCA TGGCAGCCAA CCTGCAGAGC
GGTGCGACCT TCGCCACGCC GGTGTTCGAC GGCGCCTCGG AAGAGGAAAT CCGCGGCATG
CTGAAGCTCG CCTATCCGGA CGACATCGCC AAGCTCAAGG GCCTGACCGA GACGCGCACG
CAGGCCTACC TGTACGACGG CCGCACCGGC GACCAGTTCG AGCGTCCCGT CACCGTCGGC
TACATGCACT TCCTGAAGCT GCACCACCTG GTGGACGACA AGATGCACGC CCGTTCGACC
GGACCGTACT CGCTCGTTAC CCAGCAGCCG CTGGGCGGCA AGGCGCAGTT CGGCGGCCAG
CGTTTCGGCG AAATGGAAGT GTGGGCGCTG GAAGCCTACG GCGCCGCCTA CGTGCTGCAG
GAAATGCTGA CGGTGAAGTC CGACGACGTG CAAGGCCGTA CCAAGGTGTA CGAGAGCATC
GTCAAGGGCG AACACTCCAT CGAAGCCGGC ATGCCGGAAT CGTTCAATGT GCTGGTCAAG
GAAATTCGTT CGCTGGGGCT CGACATCGAG CTCGAGCGTT CTTAA
|
|---|
| Protein sequence | MAQSSAYSYT ERKRIRKSFG NRDSVVEIPY LLQMQKDAYT AFLQAGIPPK QRTVEGLQAA
FDAAFPIVSH NGFVEMKFLE YNLAKPAFDV RECQTRGLTF ASAVRAKVQL IIYDRESSTS
QSKVVKEVKE QEVYMGEVPL MTDKGSFIIN GTERVIVSQL HRSPGVFFEH DKGKTHSSGK
LLFSARVIPY RGSWLDFEFD PKDMLYFRVD RRRKMPVTIL LKAIGLNPES ILANFFVNDN
FRLMDSGAQM EFVPERLRGE VARFDITDKS GKVVVAKDKR VTARHTRELE QSGTTHISVP
EDFLVGRVIA RNIVDADSGE ILAKANDELT EALLKKLRTA GVQDIQVIYT NELDQGAYIS
QTLRIDETVD EFAARVAIYR MMRPGEPPTE DAVQALFQRL FYNPDTYDLS RVGRMKFNAK
VGRDESTGPM VLTNEDILAV VKILVDLRNG NGEVDDIDHL GNRRVRCVGE LAENQYRTGL
ARIEKAVKER LGQAEQEPLM PHDLINSKPI SAALKEFFGA SQLSQFMDQT NPLSEITHKR
RVSALGPGGL TRERAGFEVR DVHVTHYGRV CPIETPEGPN IGLINSLALY ARLNEYGFIE
TPYRRVVDSK VTNEIDYLSA IEEGKYVIAQ ANAVLDKEGK LTGDLVSARE AGESILVGAE
RIQYMDVSPA QIVSVAASLV PFLEHDDANR ALMGANMQRQ AVPVLRPEKP MVGTGIERVS
AVDSGTVVTA TRGGIVDYVD ATRIVVRVND AEAAAGEVGV DIYNLIKYQR SNQNTNIHQR
PIVKRGDKIA KGDVVADGAS TDLGELALGQ NMLIAFMPWN GYNFEDSILI SERVVAEDRY
TSIHIEELVV MARDTKLGAE EITRDIPNLA EQQLNRLDES GIIYVGAEVQ PGDTLVGKVT
PKGETTLTPE EKLLRAIFGE KASDVKDTSL RVDQGSQGTV IDVQVFTREG ITRDKRAQQI
IDDELKRFRL DLNDQLRIVE ADAFDRIEKL LTGKVANGGP NKLAKGTKLD KAYLSSVEKF
HWFDIRPADD EVATQLESIK NSLEQTRHSF DLAFEEKRKK LTQGDELPAG VLKMVKVYLA
VKRRLQPGDK MAGRHGNKGV VSKIVPVEDM PHMADGTPCD ICLNPLGVPS RMNVGQVLEV
HLGWAGKGIG HRIGDLLQQE AKVAELRKFM EQLYNGSGRP EDLSQLSDSD VLAMAANLQS
GATFATPVFD GASEEEIRGM LKLAYPDDIA KLKGLTETRT QAYLYDGRTG DQFERPVTVG
YMHFLKLHHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYVLQ
EMLTVKSDDV QGRTKVYESI VKGEHSIEAG MPESFNVLVK EIRSLGLDIE LERS
|
|---|
| |