Gene Vapar_0552 details

Gene Information

• Locus tag: Vapar_0552
• ID: 7972962
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 611845
• End bp: 612360
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644791155
• Product: type VI secretion lipoprotein, VC_A0113 family
• Protein accession: YP_002942481
• Protein GI: 239813571
• COG category: [S] Function unknown
• COG ID: [COG3521] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03352] type VI secretion lipoprotein, VC_A0113 family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCACGC TGGGTACACA CCATTCGTCC TATGGACGCT CTTTTGCTGC GGTCTCGCGG 
CGCGTTGCAT TGGCCTCTGG CCTCGCATTG ACCGGTGCCC TGATCGCAGG CTGCGCAAGC 
AAGCCCGTGG TCACGCCGGT GTCGATCACG CTCGCGGCCG GTGCCGACGC CAACCCCGAT 
GCGCGCGGCC GCGCATCGCC GCTCACGGTG CGCATCTATG CGCTGAAGTC GCCCGGCCCC 
TTCGAAGGGG CCGACTTCTT CTCGCTGTTC GAAAAGGACC AGGCCACGCT CGGCGCCGAG 
CTGGTGCAGC GCGAAGAGAT GCTGCTGCGC CCGGGCGAAA GCAGAAAGCT CGACCTCACG 
CTGCCGGCCG ATGCCAAGGC CATTGGCGTG ATGGCCGCGT TCCGCGATCT CGACCGTGCG 
CGCTGGCGCG AAGTGCGCGC GGTGGAGCCC GGCAAGCCGC AGACGCTCAC CGTGACCTTC 
GGCGCGCGGC AGATCCGCAT CGACAGCAGC AAATAA 

 

Protein sequence

MRTLGTHHSS YGRSFAAVSR RVALASGLAL TGALIAGCAS KPVVTPVSIT LAAGADANPD 
ARGRASPLTV RIYALKSPGP FEGADFFSLF EKDQATLGAE LVQREEMLLR PGESRKLDLT 
LPADAKAIGV MAAFRDLDRA RWREVRAVEP GKPQTLTVTF GARQIRIDSS K