Gene Vapar_0550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0550 
Symbol 
ID7972960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp610153 
End bp610671 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content67% 
IMG OID644791153 
Producttype VI secretion protein, VC_A0107 family 
Protein accessionYP_002942479 
Protein GI239813569 
COG category[S] Function unknown 
COG ID[COG3516] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03358] type VI secretion protein, VC_A0107 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAAGA GCAGTCAGAA ATTCATCGCC CGCAACCGGG CGCCACGCGT GCAGATCGAG 
TACGACGTGG AACTCTACGG CGCCGAGAAG AAGATCCAGC TGCCCTTCGT GATGGGCGTG
CTGGCCGACC TGTCGGGCAA GCCGGCCGAT CCGCTCGCGC CCGTGGCCGA CCGCAAGTTC
CTCGAGTTCG ACGTGGACAA CTTCGACTCG CGCATGAAGG CCATGAAGCC GCGCGCCGCC
TTCGCGGTGG AGAACTCGCT GACCGGCGAA GGCGAGCTCA AGGTCGAGCT CACCTTCGAG
AACATGGAAG ACTTCTCGCC CGCCGCCGTG GCCAGGAAGG TCGGCGCGCT CGACAAGCTG
CTCGAGGCGC GCACCCAGCT GTCGAACCTC GTGACCTACA TGGACGGCAA GAACGGCGCC
GAGGAACTGC TGGCCAAGGT GCTCGAGGAC CCGGCCCTGC TGCAGTCGCT GGCGGCCACC
GCCAAGCCCG ACGACGAAGC GGCCAAGCCG GCCGCCTGA
 
Protein sequence
MAKSSQKFIA RNRAPRVQIE YDVELYGAEK KIQLPFVMGV LADLSGKPAD PLAPVADRKF 
LEFDVDNFDS RMKAMKPRAA FAVENSLTGE GELKVELTFE NMEDFSPAAV ARKVGALDKL
LEARTQLSNL VTYMDGKNGA EELLAKVLED PALLQSLAAT AKPDDEAAKP AA