Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0550 |
Symbol | |
ID | 7972960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 610153 |
End bp | 610671 |
Gene Length | 519 bp |
Protein Length | 172 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644791153 |
Product | type VI secretion protein, VC_A0107 family |
Protein accession | YP_002942479 |
Protein GI | 239813569 |
COG category | [S] Function unknown |
COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAAGA GCAGTCAGAA ATTCATCGCC CGCAACCGGG CGCCACGCGT GCAGATCGAG TACGACGTGG AACTCTACGG CGCCGAGAAG AAGATCCAGC TGCCCTTCGT GATGGGCGTG CTGGCCGACC TGTCGGGCAA GCCGGCCGAT CCGCTCGCGC CCGTGGCCGA CCGCAAGTTC CTCGAGTTCG ACGTGGACAA CTTCGACTCG CGCATGAAGG CCATGAAGCC GCGCGCCGCC TTCGCGGTGG AGAACTCGCT GACCGGCGAA GGCGAGCTCA AGGTCGAGCT CACCTTCGAG AACATGGAAG ACTTCTCGCC CGCCGCCGTG GCCAGGAAGG TCGGCGCGCT CGACAAGCTG CTCGAGGCGC GCACCCAGCT GTCGAACCTC GTGACCTACA TGGACGGCAA GAACGGCGCC GAGGAACTGC TGGCCAAGGT GCTCGAGGAC CCGGCCCTGC TGCAGTCGCT GGCGGCCACC GCCAAGCCCG ACGACGAAGC GGCCAAGCCG GCCGCCTGA
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Protein sequence | MAKSSQKFIA RNRAPRVQIE YDVELYGAEK KIQLPFVMGV LADLSGKPAD PLAPVADRKF LEFDVDNFDS RMKAMKPRAA FAVENSLTGE GELKVELTFE NMEDFSPAAV ARKVGALDKL LEARTQLSNL VTYMDGKNGA EELLAKVLED PALLQSLAAT AKPDDEAAKP AA
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