| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0544 |
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| Symbol | |
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| ID | 7972954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 604203 |
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| End bp | 605867 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791147 |
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| Product | FHA domain containing protein |
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| Protein accession | YP_002942473 |
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| Protein GI | 239813563 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3456] Uncharacterized conserved protein, contains FHA domain |
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| TIGRFAM ID | [TIGR03354] type VI secretion system FHA domain protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCATA TCGCTGTCAT CACCCGGCAA GGCGCTCCGG CGGGGCAGCC CATCGCTGCC
GATTTCGGGC CCAACGGGGG CACCATCGGG CGCGCCGACA CCAACACGCT GGTGCTCGAC
GATCCGGACC GCACGGTTTC GCGCGTGCAC GCGCAGGTGC TGTGCCGCGA CGGCCAGTAC
TTCGTCATCG ACCGCGGCAG CAATCCGATG CAGTGCAACG GCGTGTCGCT GGGCTCGGGC
AAGGAGGCTC CGCTCGCGGA TGGCGCGCGG CTGATCGTGG GCAGCTTCGA ACTCAGCGTG
CGCATGAGCG CGGCCGCGCC GCCGGCATTG GCCATTCCCA ACACCGTGAT GTCGGCGCCG
CTCGGCGCCG CCCCCGCGGC CAGCACCAGC GACGATCCCT TTGCCGACCT GCTTGCGGGG
CTCGGATCGC CCGCGCCTGC CGCGGCCCGT GCATCCGGTG CCAGGGCGGC CGCGCCGGCA
AGCGCGGATC CGCTGCTCTT TCCCGACCCG ATGGAAAGCG GCTCGCGCAA CGCGCAGGCC
GCGCAGGTCG ATCCCTTCGC CAACCTGCTC GGGCCCACGC CGTCCGCTGC GCCGGCCGCA
GGCTTCGGTG CGCTCGACGA TTTCTCCGAC CTCGGCGCGC CGCCCGCGCA CGGCAAGGCC
GCCGGCATCG ACGAGCTCTT CGGCGGCATG GGCGGTGGCG GCGGCATCGG CGGCGATCCG
CTCGCGCTGT CGCCGCTGGC CGACCCGCTG CTGCAGCCGA ACACGGCTTC GTCCGCCGAT
CCGCTGGCCG CATTGCAGAG CGCGGCGCCG CCCACGCCGA CACCGCGCTC CGATCACCTG
CCGATCGACC AGTTCGGCTT CACGCCGCCG AAGGCGATCA CGCCGGTTCC GGCCGCCGCG
CCGGTGGAAG CGCTGCCGCG CTTCGACGAC ATCACAGGGC AGCCGATACG CATCAGCGGC
CCTGAGGTCG CGAGCCGGCC GTTCGAGCCG CTGCCGCCAC CACCACCACC GGCGCCAGCG
CCAGCGCCAG CGCCCGTCCA GCGGGCGCCC GCCGCAGCCC CGCGCACCGC ATCCGACGAC
GAACTGCTCG CCGCCTTCCT GCGTGGCCTC GCCAGCACGC ACCAGCCGCC CGAGATGCTC
ACGCCCGGCC TCATGGAGCG CATCGGCTCG ATCCTGCGCA GCGCCACCGA AGGCACGCTG
CAACTCCTGC TCACGCGCCA GGAGTTCAAG CGCGAGGTGC GCGCCGAGGT CACGATGATC
GCGGCGCAGG CCAACAACCC GCTCAAGTTC TCGCCCACCG TGGAGGTCGC GCTGGCCCAC
CTGCTGGGCC CGGGCGTGCG CGGCTTCATG CCGCCCGAGG CCGCGATGCG CGATGCCTTC
AACGACCTGC GCGCGCACCA GTTCGGCGTG ATGGTGGGCA TGCGCGCGGC GCTGGCCCAT
GTCATTGCGC GCTTCGAGCC TGAAGAGCTC GAGAAGAAGA TCAGCGCGAA GTCGGCGCTC
GACACGCTCT TCAGCGCCAA CCGCAAGGCC AAGCTCTGGG ACCAGTTCGT CGCGCTCTAC
GGCGGCATCG CGAGCGAGGC GGAAGACGAC TTCCACAGCC TCTTCGGCAA GGCCTTCCTC
GAAGCCTATG AAGAGCAGAT GGCGCGCCTC AAGTCGGACA CCTGA
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| Protein sequence | MIHIAVITRQ GAPAGQPIAA DFGPNGGTIG RADTNTLVLD DPDRTVSRVH AQVLCRDGQY
FVIDRGSNPM QCNGVSLGSG KEAPLADGAR LIVGSFELSV RMSAAAPPAL AIPNTVMSAP
LGAAPAASTS DDPFADLLAG LGSPAPAAAR ASGARAAAPA SADPLLFPDP MESGSRNAQA
AQVDPFANLL GPTPSAAPAA GFGALDDFSD LGAPPAHGKA AGIDELFGGM GGGGGIGGDP
LALSPLADPL LQPNTASSAD PLAALQSAAP PTPTPRSDHL PIDQFGFTPP KAITPVPAAA
PVEALPRFDD ITGQPIRISG PEVASRPFEP LPPPPPPAPA PAPAPVQRAP AAAPRTASDD
ELLAAFLRGL ASTHQPPEML TPGLMERIGS ILRSATEGTL QLLLTRQEFK REVRAEVTMI
AAQANNPLKF SPTVEVALAH LLGPGVRGFM PPEAAMRDAF NDLRAHQFGV MVGMRAALAH
VIARFEPEEL EKKISAKSAL DTLFSANRKA KLWDQFVALY GGIASEAEDD FHSLFGKAFL
EAYEEQMARL KSDT
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