| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0533 |
|---|
| Symbol | |
|---|
| ID | 7972943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 593171 |
|---|
| End bp | 594238 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644791136 |
|---|
| Product | pentapeptide repeat protein |
|---|
| Protein accession | YP_002942462 |
|---|
| Protein GI | 239813552 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGCG CACTGCTGAC TCCGAAACTG CTGGCACTCG CCGTGACGCT GGGCGAGCCG
ATGGAAGACA AGGACTTTGG CGCCGGCGCC TATGCGCGCG CGTACCTGGC CGGCGGCGTG
TTCTCGCGCT GCCGGTTCGA CGAGGCCGAC CTGCGCGGCG CCGACCTGCG CGAGACGCTG
TTCGACCAGT GCAGCTTCAA GGGCGCGCTG ATGGACGGCG CCAGCCTGCG CCGCGCCGTG
CTCAACCGGT GCACCTTCGA CCATGCTGCG CTGCGCAGTG CCGACCTGCA CGGCGCGGTG
CTGACCGACT GCGCGCTGCC GCATGCGCAA CTGACCCAGG CTGTGCTGTC GATGGCAACC
GTCTCGAACT GCGACTTCGC CCATGCCGCG CTGATCGGAG CCGACCTGGA GTCTTCGACC
TTCACGCGGT CGAACCTGGT GGACGTCAAC GCGGACGACA GCCGCTGGGT CCACACCTCG
ATGCTCGCAT GCGGCTTGGC GCAAATGACC TGGGCGCGCG CCCGGATGCA GCGGGTCGTG
TTCCACGAGG TCGACCTGCA GGGGAAATCC TTCGCCGGCC TGTCCCTCGA CGGTTGCCAG
TTCGCGAACT GCAACCTCGG CGGCGCGAGC TTTCGCAACG CGCCGATGCG GCAATGCAAT
TTCCAGGGCG CGCGCCTCGA TCGTGTCGAC TTCTCCGGCG CGCAAGGGCC GATGGCCGTG
TTCTGCGATG CCCGGGGCGA AGCCGTCAAC TTCGCGGGTG CGGGGCTGCG GCAGGCGCTG
TTCACGCGCA GCATGCTGCC CGGCGCGCGC TTCGATGGCG CCGACCTGCA CCAGTGCCAC
TTTGCGGATG CGAAGCTGGC TGCCGCCTCG CTGCGCGACT GCGATCTGAG CTATGCCGAT
TTCAGCCGGG CCGACCTGCA AAAGGTCGAC GGCCGCGGCG CCACCCTGTT GCGCACCGTG
CTGCATCGCG CCGACACCGA GGACGCGCTG TGGACCGACC GCCCGCGGGC GCTGGAAACC
GACGCGGCGT TGGCGCGCGC GGAACTCTGG AGGGGGCCTG CGCCATGA
|
|---|
| Protein sequence | MPSALLTPKL LALAVTLGEP MEDKDFGAGA YARAYLAGGV FSRCRFDEAD LRGADLRETL
FDQCSFKGAL MDGASLRRAV LNRCTFDHAA LRSADLHGAV LTDCALPHAQ LTQAVLSMAT
VSNCDFAHAA LIGADLESST FTRSNLVDVN ADDSRWVHTS MLACGLAQMT WARARMQRVV
FHEVDLQGKS FAGLSLDGCQ FANCNLGGAS FRNAPMRQCN FQGARLDRVD FSGAQGPMAV
FCDARGEAVN FAGAGLRQAL FTRSMLPGAR FDGADLHQCH FADAKLAAAS LRDCDLSYAD
FSRADLQKVD GRGATLLRTV LHRADTEDAL WTDRPRALET DAALARAELW RGPAP
|
|---|
| |