| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0527 |
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| Symbol | |
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| ID | 7972937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 580428 |
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| End bp | 582320 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791130 |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_002942456 |
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| Protein GI | 239813546 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCCTC GGCTGCTGAA CCTGTATGAA CAGGAACTGC GCTACTTCCG CGAGAGCTCC
TCGGAGTTTG CGCGCGCCTT TCCGAAGATC GCGCACCGCC TGGGCATCGA AGGCCAGGAG
GTCGCCGATC CGTACGTCGA GCGGCTGATC GAGGCCACGG CCTTCCTGTC GGCGCGCGTC
AACCTGAAGC TCGATGCCGA GTACCCGCGC TTCACGGGCC ACCTGCTCGA CATCGTCTAT
CCGAATTTCC TCGCGCCCAC GCCGGCCATG GCGGTCGTCT CGTTCTCGCC CGACCTGGAC
GACGCAAACC TTGCGACCGG TCCCAGGCTG CCGCGCGGCG CGGGCCTGCG CGCGCGGCAG
GCCGTGGGGC AGAACACGCA CTGCGAGTTC CGCACCTCGA GCGCGCTGCG CATCTGGCCG
ATCGAGATCC AGCGCGCCCA GTACTTCACC TATGCGCCCG ACCTGCCGCT CGCCACGCAC
CCCCAGTCCC GCGCCATCCG CGGCGGCCTG CGCATCACGC TGCATGCGAC GGCGGGGCTC
AACTTCAGCC AGATTCAGCT CGACGACCTG GTGCTGCACC TGGGCGGCGC CGAAGATGTG
GCGTGGCAGC TGCAGGAGTG CGCGCTGGGC CAGCCCATCG GCGTGATGGT GCGGCCGCTG
TCGCCCACCG GTGCGCTGCA GGGCGCGGCG CAGAGCCTGC CGGCCACGGC GATCCAGCCG
GTCGGCTTCG AGGACGATGA AGCGCTGCTG CCGGTCACGG CCACCGGCTT CTCGGGCTTT
CGGCTGCTGC AGGAGTACTT CGCGTTTCCA CAGCGCTTCC AGTTCCTGCG CATCGCCGGG
CTGCAGTCGG TGCTTGCGGC CATGCCGGTC GCCGAGGTCG AGCTCGTGCT GCTGTTCTCG
CGCGGCGATG CGGCGCTCGA AAAGCTGGTG AGCGCCGACA ACGTGCAGCT GCACTGCGTG
CCGGTGGTCA ACCTGTTCAA CAAGCGGCTC GACCGCGTGC CGCTGACCGA AGGCGTGAGC
CAGTTCCACC TGGTGCCCGA CCGCACGCGG CCGCAGGATT TCGAGGTGCA CACTGTCACC
GAGGTCATCG GCCACGGCGC ACCGGGCGCC GATGCAGCGG CCGCCGAACA GGTGTTCCGC
CCTTTCTATT CGGCCTTCCA TGGCACGCGG CACAGCCACC CGGCCTACTT CACGACCACG
CGCGAGCCGC GGATGCTGTC GGTGCGCCAG CGCACCGAGG GCCATCGCAG CAGCCACATC
GGCTCCGAGG TCTACATGCA GATCGTCGAT CCGCAGCAGG CGCCGTACGC CGCCACGCTG
CGGCAGCTCG CGGTGGCCGC GCTGTGCACC AACCGCGACC TGCCGCTCCT GATGCCGCTG
GGACGCGACA ACGACTTCGA CTGCGTCGAC TCCTTCCCCG TGCAGCGGGT GCGCATGGTG
CGCGGTCCTT CGCGGCCGGT GTCGCCGGTG GTGAGCCAGG GGCTGGGCTG GCGGGTGGTC
GATCACCTGG CGCTCAACTA CCTGTCGATC TCCGACAGCA CGCCGGAGCA AGGCGCTGCC
GCATTGCGCG AAACGCTGAT GCTCTATGCC ACGCATGCCG ACGAGATGCG CCAGGGCCAG
GTGCGCGGCC TGCTCTCGGT GAAAGCCAAG CCCGTGGCGC GCCGCCTGCC GCTCAAGGGG
CCGATCGCTT TCGGGCGCGG GCTCGAAGTG ACGCTCGAGG TCGACAAGGA CGCATTCCAC
GGCCACAGCG TGTTCCTGTT CGGCGCGGTG ATGGCGCGCT TTCTGGCGCG CCATGTGGAG
GTCAACCATT TCGTCGAGAC CGTGCTGCGC GTGGCGGGCC GGGGCGAGAC CATGCGATGG
AGGCCGCTGT GCGGGACCCG GCAGATTCTG TAG
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| Protein sequence | MDPRLLNLYE QELRYFRESS SEFARAFPKI AHRLGIEGQE VADPYVERLI EATAFLSARV
NLKLDAEYPR FTGHLLDIVY PNFLAPTPAM AVVSFSPDLD DANLATGPRL PRGAGLRARQ
AVGQNTHCEF RTSSALRIWP IEIQRAQYFT YAPDLPLATH PQSRAIRGGL RITLHATAGL
NFSQIQLDDL VLHLGGAEDV AWQLQECALG QPIGVMVRPL SPTGALQGAA QSLPATAIQP
VGFEDDEALL PVTATGFSGF RLLQEYFAFP QRFQFLRIAG LQSVLAAMPV AEVELVLLFS
RGDAALEKLV SADNVQLHCV PVVNLFNKRL DRVPLTEGVS QFHLVPDRTR PQDFEVHTVT
EVIGHGAPGA DAAAAEQVFR PFYSAFHGTR HSHPAYFTTT REPRMLSVRQ RTEGHRSSHI
GSEVYMQIVD PQQAPYAATL RQLAVAALCT NRDLPLLMPL GRDNDFDCVD SFPVQRVRMV
RGPSRPVSPV VSQGLGWRVV DHLALNYLSI SDSTPEQGAA ALRETLMLYA THADEMRQGQ
VRGLLSVKAK PVARRLPLKG PIAFGRGLEV TLEVDKDAFH GHSVFLFGAV MARFLARHVE
VNHFVETVLR VAGRGETMRW RPLCGTRQIL
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