| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0514 |
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| Symbol | |
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| ID | 7972924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 563214 |
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| End bp | 564545 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791117 |
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| Product | type VI secretion protein, VC_A0114 family |
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| Protein accession | YP_002942443 |
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| Protein GI | 239813533 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTGGC GAACAAAAGT GGTCTGGAGC GAGGGGATGC TGCTGCAGCC CCAGCACCTG
CAGCAAAGCG AGCGTCATGC CGACCATGCG AGGCATGTGC TGCTGCGTTC CACCACGCCC
TATGCCTGGG GATTCGCGGA GATCGAGATC GATCAGGCCG CGCTCACGCT GGGCAAGCTC
GCGCTGGTGC GGGCGGTGGG CCTGTTCGGC GACGGCACGG TGTTCGACAT GCCGGCGGTC
GATCCGCTGC CCGAGCCCAT CGACATTCCG CCCGCCATGC GCGACGAGGC CGTGGTGCTG
GCGCTGCCGC TGCGCCGCGC CGGTGCCCGC GAGGCCGATG CCGAAGACTA TGAAGAGCTG
GTGCGCCACC GCGTGCTCGA GTCCGAGGTG CCCGACTCCA ACACCGCGGG CGAGCGCACC
GCCGTGCTGC AGCTGGGCCA GCTGCACACG CGCCTGATGC GCGCCAGCGA AGCCACCGAT
GCCTGGACCA CGCTGGGCGT GGCGCGCGTG CTGGAGCGCC GCGTCGACAA CCAGGTGCAG
CTCGACCGCG CGATGCTGCC GCCGCTCTTG GACGTGGCGG GCCATGCCGT GATCCGTTCC
TGGCTCGACG AGCTGCTGGG CCTCTTGCGC CAGCGCGGCG AGGCGCTGGC CGGCCGCATG
ACGCAAGGCG GCACCGGCGG CGTGGCCGAG ATCGCCGACT TCATGCTGCT GCAGACCGTC
AACCGCAACG AGGCGGTCTT CGCGCACCTG GCCCAAAGCG CCATGCTGCA TCCGCAGCAC
TTCTTCGAGC ATGCGCTCGG GCTGGCCGGC GACCTGGCGA GCTTTCGCGA TTCGCGCCGC
GTCACGCGCT TCGGCCCCTA CGTCCACGAC GACCTGGCGC TGAGCTTCCG TCCGCTGATG
GACGACCTGC GGCGCAGCCT CTCGATGGTG CTGGAGCAGT CGGCCATCCG CATCGACCTG
CACGACCGCA AGCACGGCGT GCGCGTGGCG GTGGTGACCG ACGTGGAGCT GCAGCGCAAG
GCGACCTTCG TGCTCGCGGT GAATGCCAAC ATGCCGAGCG AAGCGCTGCG CGCGCGCTTT
CCCACGCAGG TCAAGATCGG CCCGGTCGAG CGCATCCGCG ACCTCGTGAA CCTGGCGCTG
CCGGGCGTCA CGCTCACGCC GATGCCCGTG GCGCCAAGGC AGATTCCCTT CCACACCGGC
GCCAACTACT TCGAGCTCGA AACGCGCAAC AGCGACCTGT GGCGCCAGCT GGAGCAATCG
GGCGGCATCG CGATGCACAT CGCGGGCGAC TTCCCCGGCC TCGACCTCGC GTTCTGGGCC
ATTCGTTCCT AG
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| Protein sequence | MSWRTKVVWS EGMLLQPQHL QQSERHADHA RHVLLRSTTP YAWGFAEIEI DQAALTLGKL
ALVRAVGLFG DGTVFDMPAV DPLPEPIDIP PAMRDEAVVL ALPLRRAGAR EADAEDYEEL
VRHRVLESEV PDSNTAGERT AVLQLGQLHT RLMRASEATD AWTTLGVARV LERRVDNQVQ
LDRAMLPPLL DVAGHAVIRS WLDELLGLLR QRGEALAGRM TQGGTGGVAE IADFMLLQTV
NRNEAVFAHL AQSAMLHPQH FFEHALGLAG DLASFRDSRR VTRFGPYVHD DLALSFRPLM
DDLRRSLSMV LEQSAIRIDL HDRKHGVRVA VVTDVELQRK ATFVLAVNAN MPSEALRARF
PTQVKIGPVE RIRDLVNLAL PGVTLTPMPV APRQIPFHTG ANYFELETRN SDLWRQLEQS
GGIAMHIAGD FPGLDLAFWA IRS
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