Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0436 |
Symbol | |
ID | 7970177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 477306 |
End bp | 478445 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644791039 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002942365 |
Protein GI | 239813455 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGCA GAAGTTTTGT CGCCGGAACG GCGGTTTTCG CAGCGGGCCT GGCCCATCTC TCGTCCGCGC AAGCGGCCGA ATCCGGGGTG ACCGACACCG AGATCGTGCT CGGCAGCTCG GCCGTGCTGA GCGGCCCGCT CGGCTCGCAG ATCAAGGTGG TGCACAACGG CGCCGCGCTG GCCTTCGACG CCATCAATGA GCAGGGTGGC GTGGGCGGAC GCAAGATCAA GCTGGTGGCG CTGGACGACG AGCTCAAGCC CGAGAAGGCG GTCGAGAACT ACGCCAAGCT GCTGAACGAC CACCGCGTGT TCGCGTTCTT CGGCTGCGTG GGCTCGGGCA CCACGGCCGC CGCGGCCAAG CTGCTGCAGC AAAGCGGCGC GCCCAGCGTC GGCGGCTACG GCGTGGGCGA CAGTGCGCGC GAACGCGTGG CGGGCTCGGC CTACTTCGTG CGCGCCAGCA ACGCACGCGA AGCGCAGGCG CTGGTCGAGC ACCTGTCGAC CATCGGCGTG AACAAGATCG CGATCGCCCA CCTGGACAAT CCCGGCGGCG TGGAGGCGGT GAAGCTGATC GAGGCGGCCA TGGCCACGAA CAAGCAGGCG CCCGCGCTGG TGGTGTCGGT GAAGGGCGAC GGCTCGACCT CCGCGGCCGC CGGCAAGATG CTGGCCGACA GCCAGTCCCA GGCCGTGCTG ATGTACCTGG CCGGCACGGT GGCCGGCGAG GTGATCAAGG CGACCTATGC GGCCGGCAGC AAGCCGATGT TCTACGGCAT GTCGATCGTG CCGGGCGAGG TCACGGCCAA GGTGGTGCAG CTGCAGGCCA GCGGCCTGGC CATCTCGCAG GTCATGCCCT ACCCCTGGGG CGAGGTGGAA TCCGTCACGC GCGACTACCG CCGGCTGGCC GAGCGCGCGC AGGTGCCGGT GGGCTACGGC AGCTTCGAGG GCTACCTGAA CGCGCTGGTG ATGATCGAGG CGCTCAAGCG CACCGGCCGC GACCTGACGC GCGCGCGCCT GCATGCAACG CTGCGGGCGT TCAGGCTGCG CCTGGCCGGC ATGGACATCG ACTTCTCGAC CGGCGCCAAT GCCGGCTCGC GCTTCATCGA GATGGTGCGC GTCACGCCCG AAGGCCGCTT CGTGCGCTGA
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Protein sequence | MQRRSFVAGT AVFAAGLAHL SSAQAAESGV TDTEIVLGSS AVLSGPLGSQ IKVVHNGAAL AFDAINEQGG VGGRKIKLVA LDDELKPEKA VENYAKLLND HRVFAFFGCV GSGTTAAAAK LLQQSGAPSV GGYGVGDSAR ERVAGSAYFV RASNAREAQA LVEHLSTIGV NKIAIAHLDN PGGVEAVKLI EAAMATNKQA PALVVSVKGD GSTSAAAGKM LADSQSQAVL MYLAGTVAGE VIKATYAAGS KPMFYGMSIV PGEVTAKVVQ LQASGLAISQ VMPYPWGEVE SVTRDYRRLA ERAQVPVGYG SFEGYLNALV MIEALKRTGR DLTRARLHAT LRAFRLRLAG MDIDFSTGAN AGSRFIEMVR VTPEGRFVR
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