| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0394 |
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| Symbol | |
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| ID | 7973538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 425381 |
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| End bp | 427060 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644790997 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002942323 |
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| Protein GI | 239813413 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACC GCCCCTGGCT CAGCAGCTAT CCGCAAGGCG TGCCCGCCGA CATCGACGCC
TCGCAGTATT CCTCGCTGGT CGGTCTCATG GAGGAGAGCT TTGCCAGGTA CGCCGACCGC
ACGGCCTACA GCTTCATGGG CAAGGACGTG AGCTATGCGG AGACCGACAA GCTCAGCAAG
GCCTTCGGCG CGTACCTGCA GGGGCTCGGC CTCGCCAAGG GCGACCGCGT CGCGGTCATG
ATGCCCAACT GCCCGCAGTA CCCGATCGCG GTCGCGGCCA TCCTGCGCGC CGGCCTGATC
CTGGTGAACG TGAATCCGCT GTACACGCCG CGCGAACTCG AGCACCAGCT CAAGGACTCG
GGCGCCAAGG CCATCGTCAT CATGGAGAAC TTCGGCACCA CGCTGCAGCA GTGCATCGCG
GCCACGCCCA TCAAGCACAT CGTGCTGGCG GCCATGGGCG ACCGGCTCGG CTTCCTCAAG
GGGGCGCTCG TCAACTACGT GGTGCGCAAC GTGAAGAAGC TGGTGCCGCA CTACAGCCTG
CCGGGCGCGG TGCGCTTCAA CGATGCGCTC GACCAGGGAG CGGGCCGCAC GCTGAAGGCG
CCGGCCCTCG GCCCCGACGA CGTGGCCGTC CTGCAGTACA CCGGCGGCAC CACCGGCGTC
TCCAAGGGCG CGGTGCTGCT GCACCGCAAC GTCATTGCGA ACGTGCTGCA GTCCGAAGCC
TGGAACGAAC CCGTGATGGC CCAGGTGCCG GCGGGCGAGC AGCCCACGAG CGTGTGCGCG
CTGCCGCTCT ATCACATCTT CGCCTTCACC GTGGGCATGA TGCTGAACAT GCGCACGGGC
GGCAAGCTGA TCCTCATTCC GAATCCGCGC GACCTCGCGG GCGTGCTCAA GGAACTGTCC
AAGCACACGA TCCACAGCTT TCCCGCGGTC AACACGCTGT TCAACGGGCT GGCCAACCAC
CCCGACTTCA ACACCGTCAA CTGGAAGAAC CTCAAGGTGT CGGTGGGCGG CGGCATGGCC
GTGCAGGCGG CGGTCGCGAA GCTCTGGCTC GAGAAGACCG GCTGCCCGAT CTGCGAGGGC
TACGGCCTGT CCGAAACCTC GCCCTCGGCC ACCTGCAACC CCACCAACAG CAAGGCCTAC
ACCGGCACCA TCGGCCTGCC GCTGCCGAGC ACCTGGCTCA AGCTGCTCGA CGACGAAGGC
CGCGAGGTGC CGCCGGGCCA GCCCGGCGAG ATCGCGATCA AGGGCCCGCA GGTGATGGCC
GGCTACTGGC AGCGCCCCGA CGAGACCGCC AAGGTCATGA CGCCCGACGG CTACTTCAAG
AGCGGCGACA TCGGCGTGGT CGACGAGCGC GGCTACTTCA AGGTGGTCGA CCGCAAGAAG
GACATGATCC TGGTCTCGGG CTTCAACGTG TACCCGAACG AGATCGAGGA CGTGGTGGCG
CAGATTCCGG GCGTGCTCGA ATGCGCGGCG GTCGGCGTGG CCGACGAGAA GACCGGCGAG
GCCGTCAAGC TGGTGATCGT CAAGAAGGAC GAGTCGCTGA CCGAAGCGCA GGTGCGCGAA
TACTGCAGAG CAAACCTTAC GGGTTACAAG CAGCCGCGGA TCGTGGAGTT CCGTGGCGAA
CTCCCGAAGA CGCCAGTCGG AAAGATCCTG CGGCGCGAAC TGCGCGACGT CAAGAAGTAA
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| Protein sequence | MTDRPWLSSY PQGVPADIDA SQYSSLVGLM EESFARYADR TAYSFMGKDV SYAETDKLSK
AFGAYLQGLG LAKGDRVAVM MPNCPQYPIA VAAILRAGLI LVNVNPLYTP RELEHQLKDS
GAKAIVIMEN FGTTLQQCIA ATPIKHIVLA AMGDRLGFLK GALVNYVVRN VKKLVPHYSL
PGAVRFNDAL DQGAGRTLKA PALGPDDVAV LQYTGGTTGV SKGAVLLHRN VIANVLQSEA
WNEPVMAQVP AGEQPTSVCA LPLYHIFAFT VGMMLNMRTG GKLILIPNPR DLAGVLKELS
KHTIHSFPAV NTLFNGLANH PDFNTVNWKN LKVSVGGGMA VQAAVAKLWL EKTGCPICEG
YGLSETSPSA TCNPTNSKAY TGTIGLPLPS TWLKLLDDEG REVPPGQPGE IAIKGPQVMA
GYWQRPDETA KVMTPDGYFK SGDIGVVDER GYFKVVDRKK DMILVSGFNV YPNEIEDVVA
QIPGVLECAA VGVADEKTGE AVKLVIVKKD ESLTEAQVRE YCRANLTGYK QPRIVEFRGE
LPKTPVGKIL RRELRDVKK
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