Gene Vapar_0382 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0382 
Symbol 
ID7973526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp415546 
End bp416259 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content68% 
IMG OID644790985 
Producthypothetical protein 
Protein accessionYP_002942311 
Protein GI239813401 
COG category[S] Function unknown 
COG ID[COG0217] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01033] DNA-binding regulatory protein, YebC/PmpR family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.681475 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCGCAC AGTGGAAAGC AAAGCACAAG GACCTGGCGG CCAATGCCAA GGGCCGCCTG 
TTCGGAAAAC TGGCCAAGGA AATCATGGTG GCCGCGCGCA GCGGCGCCGA TCCGGCCTCC
AATGCGCGCC TGCGGCTGGT GGTGGAGCAG GCCCGCAAGG TCTCGATGCC CAAGGACACG
CTGGACCGCG CCATCAAGAA GGGCGCGGGG CTCAGCGGCG AGGCGGTGCA CTTCGAGCAT
GTGATCTACG AAGGCTTTGC GCCGCACCAG GTGCCCGTGA TGGTCGAGTG CCTGACCGAC
AACGTGAACC GCACCGCGCC TGAAATGCGC GTGCTGTTCC GCAAGGGCCA GCTCGGCACC
TCGGGCTCGG TGTCGTGGGA CTTCGACCAC GTGGGCATGA TCGAGGCCGA GCCTTCGCGT
GCCGATGCCG ATGCCGAAGT CGCCGCCATC GAAGCGGGCG CGCAGGACTT CGAGGCGGCC
GGCGAAGGCG GCGCCACGGT GTTCCTGACC GACCCGACCG ACCTCGACCT GGTGAGCCGC
GCGCTGCCGG CCCAGGGCTT CACCGTGCTG TCGGCCAAGC TGGGCTACAA GCCAAAGAAC
CCGGTCGATC CGGCCAGCCT CAGCGCGGAG CACCTCGAGG AGGTCGAAGT GTTCCTGGCC
GCCATCGATG CCAACGACGA CGTGCAGAAC GTGTTCGTGG GCCTGGCGGG CTGA
 
Protein sequence
MGAQWKAKHK DLAANAKGRL FGKLAKEIMV AARSGADPAS NARLRLVVEQ ARKVSMPKDT 
LDRAIKKGAG LSGEAVHFEH VIYEGFAPHQ VPVMVECLTD NVNRTAPEMR VLFRKGQLGT
SGSVSWDFDH VGMIEAEPSR ADADAEVAAI EAGAQDFEAA GEGGATVFLT DPTDLDLVSR
ALPAQGFTVL SAKLGYKPKN PVDPASLSAE HLEEVEVFLA AIDANDDVQN VFVGLAG