Gene Vapar_0379 details

Gene Information

• Locus tag: Vapar_0379
• ID: 7973523
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 412488
• End bp: 413042
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644790982
• Product: single-strand binding protein
• Protein accession: YP_002942308
• Protein GI: 239813398
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0629] Single-stranded DNA-binding protein
• TIGRFAM ID: [TIGR00621] single stranded DNA-binding protein (ssb)

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.806317
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATCGG TCAACAAAGT CATCGTCGTC GGCAATCTGG GGCGCGACCC CGAAATGCGT 
ACCTTCCCGA GCGGCGACCA GGTCGCGAAC GTCACCGTGG CCACCACCGA TCGCTGGAAA 
GACAAGCAAA GCGGCGAAAT GCGCGAAGCC ACCGAGTGGC ACCGCATCGT CTTCAACGGC 
CGCCTGGCCG AAATCGCCGG CCAGTACCTG CGCAAGGGCT CGCAGGTGTA CGTCGAAGGC 
AGCCTGCGCA CGCGCAAGTG GACCGACAAG GACGGCATCG AGAAATACAC CACCGAAATC 
CGCGCCGACC AGATGCAGAT GCTGGGCAGC CGCCAGGGCC AGGGCGGCCC CTCAGGCGGT 
CCCGAGGACG ACGGCGGCTA TTCGCAGGGC GGCGGTGGCG GCGGCTACTC GCAAGGCGCC 
GGCGGTGGCG GTGGCGGCGG CTATGCCCCC CGCGCACCGG CCGCGGCACC GCGCGCTCCG 
GCGCCGGCAC CGCGCCAGGC TCCGGCCAAG TCGTCGTCGG GCTTCGACGA CATGGACGAC 
GACATTCCGT TCTGA 

 

Protein sequence

MASVNKVIVV GNLGRDPEMR TFPSGDQVAN VTVATTDRWK DKQSGEMREA TEWHRIVFNG 
RLAEIAGQYL RKGSQVYVEG SLRTRKWTDK DGIEKYTTEI RADQMQMLGS RQGQGGPSGG 
PEDDGGYSQG GGGGGYSQGA GGGGGGGYAP RAPAAAPRAP APAPRQAPAK SSSGFDDMDD 
DIPF