Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0366 |
Symbol | |
ID | 7973510 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 391790 |
End bp | 392995 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644790969 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002942295 |
Protein GI | 239813385 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCACC CGTCCCCGAA GTCGCCCGCG CTGCCGCGCA CCCTGCTTTC GCTGCTGCTC TGTGGCGCGG CCCTTGGTGG CGCGGCATCG GCCATGGCCG CGCCCGTGAA GGTGGGCCTG GCGCTCGACA TCTCGGGCCC GTTCGCGGCA TTGGGCGCCG AGGCGCGCGA CGGCTTCGCG CTCGGCATCA AGCAGCTGGG CGGCAAGCTC GGCGGGCAGG ACGTGGAGTT CGTGCAGGCC GACATGGCCG GCAGCCCCGA CCAGGCCAAG CAGCTGGTCG ACCGCATGAT CCAGCGCGAC AAGATCGACC TCTTCAGCGG CCCGATCGGC TCCAACGTGG CGCTGGCCGT GGGCCCGACG CTGTTCAATG CCAAGGTGCC GTACCTCTCG GCCAATGCCG GCCCGAGCCA GTTCGCGGGC GCGCAGTGCA ATGCGTATTT CTTCGGCACC GCCTACCAGA ACGACCAGTT CCACGAGGCC GCCGGCAAGT TCGCGCAGGA CCGCGGCTTC AAGAAGACCG TGCTGATCGC GCCCAACTAT CCCGCGGGCA AGGATGCACT GGGCGGCTTC AAGCGCCAGT TCAAGGGCCA GGTGGCCGAC GAGCTCTACA CCAAGCTCGG CCAGATCGAC TACGCCGCAG AGCTCGCGCA GCTGCGCGCG GCCAAGCCCG ACTCCATCTA CTTCTTCCTG CCCGGCGCGA TGGGCATCAA CTTCATCAAG CAGTTCGTGG GCGCGGGCCT GTCGAAGGAC ATCACGCTCG TGACCAGCGG CTTCTCGGCC GACGAGGACG TGATCGGCGC GGTGGGCGAA CCGATGCTGG GCCTGTTCAA CACCTCGCAC TGGGCACACG ACCTCGACAA CGCCGCCAAC AAGGCCTTCG TGGCCGCGTT CCGCAAGGAA TACAACGGCC GCTACCCTTC CGTGTACGCG GCGCAGGCCT ATGACGCGAT CCTGGCGATG GATGCGGCCG TGAAGCAATC GGGCGGCAAC GCGCAGAACC GCGAGGCCGT GGTGGCCGCG CTCAAGAAGG CCAACTACGC ATCCACGCGC GGCAGCTTCA AGTACGCGAA CAACCACTAT CCGGTCGAGA ACTTCTACCT GCGCGTGATC GGCAAGGACG CACAGGGCAA GGTCACGAAC AAGCTGATCA ACACGGTTCT CACGAACTAC GGCGACTCGT ACGCCGACAA GTGTCCCCTC AAGTGA
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Protein sequence | MSHPSPKSPA LPRTLLSLLL CGAALGGAAS AMAAPVKVGL ALDISGPFAA LGAEARDGFA LGIKQLGGKL GGQDVEFVQA DMAGSPDQAK QLVDRMIQRD KIDLFSGPIG SNVALAVGPT LFNAKVPYLS ANAGPSQFAG AQCNAYFFGT AYQNDQFHEA AGKFAQDRGF KKTVLIAPNY PAGKDALGGF KRQFKGQVAD ELYTKLGQID YAAELAQLRA AKPDSIYFFL PGAMGINFIK QFVGAGLSKD ITLVTSGFSA DEDVIGAVGE PMLGLFNTSH WAHDLDNAAN KAFVAAFRKE YNGRYPSVYA AQAYDAILAM DAAVKQSGGN AQNREAVVAA LKKANYASTR GSFKYANNHY PVENFYLRVI GKDAQGKVTN KLINTVLTNY GDSYADKCPL K
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