Gene Vapar_0366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0366 
Symbol 
ID7973510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp391790 
End bp392995 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content67% 
IMG OID644790969 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_002942295 
Protein GI239813385 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCACC CGTCCCCGAA GTCGCCCGCG CTGCCGCGCA CCCTGCTTTC GCTGCTGCTC 
TGTGGCGCGG CCCTTGGTGG CGCGGCATCG GCCATGGCCG CGCCCGTGAA GGTGGGCCTG
GCGCTCGACA TCTCGGGCCC GTTCGCGGCA TTGGGCGCCG AGGCGCGCGA CGGCTTCGCG
CTCGGCATCA AGCAGCTGGG CGGCAAGCTC GGCGGGCAGG ACGTGGAGTT CGTGCAGGCC
GACATGGCCG GCAGCCCCGA CCAGGCCAAG CAGCTGGTCG ACCGCATGAT CCAGCGCGAC
AAGATCGACC TCTTCAGCGG CCCGATCGGC TCCAACGTGG CGCTGGCCGT GGGCCCGACG
CTGTTCAATG CCAAGGTGCC GTACCTCTCG GCCAATGCCG GCCCGAGCCA GTTCGCGGGC
GCGCAGTGCA ATGCGTATTT CTTCGGCACC GCCTACCAGA ACGACCAGTT CCACGAGGCC
GCCGGCAAGT TCGCGCAGGA CCGCGGCTTC AAGAAGACCG TGCTGATCGC GCCCAACTAT
CCCGCGGGCA AGGATGCACT GGGCGGCTTC AAGCGCCAGT TCAAGGGCCA GGTGGCCGAC
GAGCTCTACA CCAAGCTCGG CCAGATCGAC TACGCCGCAG AGCTCGCGCA GCTGCGCGCG
GCCAAGCCCG ACTCCATCTA CTTCTTCCTG CCCGGCGCGA TGGGCATCAA CTTCATCAAG
CAGTTCGTGG GCGCGGGCCT GTCGAAGGAC ATCACGCTCG TGACCAGCGG CTTCTCGGCC
GACGAGGACG TGATCGGCGC GGTGGGCGAA CCGATGCTGG GCCTGTTCAA CACCTCGCAC
TGGGCACACG ACCTCGACAA CGCCGCCAAC AAGGCCTTCG TGGCCGCGTT CCGCAAGGAA
TACAACGGCC GCTACCCTTC CGTGTACGCG GCGCAGGCCT ATGACGCGAT CCTGGCGATG
GATGCGGCCG TGAAGCAATC GGGCGGCAAC GCGCAGAACC GCGAGGCCGT GGTGGCCGCG
CTCAAGAAGG CCAACTACGC ATCCACGCGC GGCAGCTTCA AGTACGCGAA CAACCACTAT
CCGGTCGAGA ACTTCTACCT GCGCGTGATC GGCAAGGACG CACAGGGCAA GGTCACGAAC
AAGCTGATCA ACACGGTTCT CACGAACTAC GGCGACTCGT ACGCCGACAA GTGTCCCCTC
AAGTGA
 
Protein sequence
MSHPSPKSPA LPRTLLSLLL CGAALGGAAS AMAAPVKVGL ALDISGPFAA LGAEARDGFA 
LGIKQLGGKL GGQDVEFVQA DMAGSPDQAK QLVDRMIQRD KIDLFSGPIG SNVALAVGPT
LFNAKVPYLS ANAGPSQFAG AQCNAYFFGT AYQNDQFHEA AGKFAQDRGF KKTVLIAPNY
PAGKDALGGF KRQFKGQVAD ELYTKLGQID YAAELAQLRA AKPDSIYFFL PGAMGINFIK
QFVGAGLSKD ITLVTSGFSA DEDVIGAVGE PMLGLFNTSH WAHDLDNAAN KAFVAAFRKE
YNGRYPSVYA AQAYDAILAM DAAVKQSGGN AQNREAVVAA LKKANYASTR GSFKYANNHY
PVENFYLRVI GKDAQGKVTN KLINTVLTNY GDSYADKCPL K